Gene detail

Detail information of GWHGAAEX005754/evm.TU.scaffold_17.109

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|261416687\|ref\|YP_003250370.1\|	8.00E-23	SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes S85]
KOG	KOG0390	0	DNA repair protein, SNF2 family
nr	gi\|672194402\|ref\|XP_008776285.1\|	0	PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9M297\|CLSY1_ARATH	0	SNF2 domain-containing protein CLASSY 1
trEMBL	tr\|K4A2C2\|K4A2C2_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si033019m}
trEMBL	tr\|K4A2C2\|K4A2C2_SETIT	4.00E-46	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si033019m}
TAIR	AT3G42670	0	chromatin remodeling 38

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	3682992	3752155	-

Transcript Sequence
>GWHTAAEX005754 TTAAACTTTTACTTTTTCTCCTGAGTCGACGAACTAACCCCTCGACTTCTCACCCTACCGCCGACGTCGGCGTTCACACGCCGGCGTCCATCTTCCTTAATGTATGCCCTAACGTCACCTTTCAGGCCTTGTTTTCCCTCGATGATATAAAAACCGGGACACCTTCCTCACTTCCCCTCCTCATTCTTCTCCAGGTGATTGGATTCTTAAAATTGAAATAGTGCATTATAGCTGAAGGAGAATGCAGGACATAAGCACCAAAAACCCAATTTGTTCAACACCATTTGAGTGTTTCTTTCAAGGATCATGGCACGGGACAGAGTTTGTGAGTATCATAAATGGCAAAACTTTTGCTTGCATCCACCAGCAGGGTTCAGCTGTAGAAAAAGTAATTTGTTGGGACAGCATCCGGCTACGCTCTAGAAAAGCAAATGTCTGTGATTGCAGACACCTTCTAAAAGTTGGAGCTGATGTTTGCGTACTTTCATCTTGTTGGATTTCAGATAGTTCAGATCTCAAATCGCAGCAGCCTTTGCAGCTGCCAATGTGGTATGATGCAAAAATTGTATCTACAAAGCACAGCGATCATGAAAGTGGATGTTCTTGCTTTTTTTCTGTCATTGTCTATAAAAAACGGGCAATAGATGATCATAGAAAGAGCAGACCGTATGATAGAGCTGAAACTGTCACAATTGACAAGATTGCCATACTTCAGAAGCTAAATTATAAACTCACTGTTGATGGGTTATATCAATGGAGTTTCTCAGAGGATTGCATTACTTTTAAGAGAAGTAAACTTCTAAGTGGCGCTGTTTCTTCCCAAATTTCATGGCTAGTTCTCCTCTCTGTTCTGAAAGGAATACACTTTCGTATTAAATCAGTTCAAGGAAACATACTGTACCAAATTTTGGAAAAAGATCAGAAGTCAGCTGATTGTTGCAAGGCATTCTCTTTAAAGCCTGATGCAGTCTTAATAACCATGCATTTCAAGCAGTTACTCGAGTATTCACGCCCAGTTGTCAAGACGCATTGTCTCTTTGGTTTGAGAAGTGTGGATGCAGAAAGATATTTAAGTGTTGGAAGTGAACTTGAGGAGAAGGTAATTGCAGGTATGGATAGTGAATCTGACATTGAAGTACTCTATGATAAAAAGAGTCTGAGAAGATCAAAGCGCCAAAAGATAAAACCGGATTGGTTCACAGGCCAATCATTTTCTGAGATTTGTGTTAAAAAGAAGCACTGGGCACGAGATAAAGACCGGCTGGATAATATAAAAGTGAAACAACAAAATTTGCAACATAATCTTTTGACAAGTTTCTTATCAACAGACTTTGATGAGTTAAATCATAATATTAAGTCGAATAAGGCACAGGCCACAAACCAATTGGTGCACAAAGAGCAGAAACACTTGATTTCAGGAAGTGCTGAATGTGCAGCAGCTATGCAGAATTTTGTTTGTAAGACATTAGCAGATGAAAATGAAAACGCAGAAGGCCGATCACAAAATCCTCTTAAAATGGATTCTGAAGAAATCTGTGAGGAGCATCCAACCAAGTCACAAGATAGACAAAAAGAGCATGGTGCAAACAGTTTGATACAATCTGATTGTTTAATAACTTACTCAACTAACTTAACTTGTAAATCAAAGAGAAATAGGGCAACAGATGTAGTCCAGCTGGAGCACAAAAACCAGAAACAATTTGCTTCATTGGATAACCTCGAATTTGTTCGTGAAAAGGAGAGTTCAAGCAGTGATGAATGTGCAGAACCATCACAAATTTTACCAAGAAAGAAATCATTAGATGAAAATGTTGAAAAAGAAATCTTTGATGAACATCCATCTAAGCCACAAAATAGGCTAGAGGAGCATGGATTAGGTGACATGATACAACCTGACCATTTCAATAGTAACTTATTAAAAAATTTTGATTACAAGTCAAAGACTAATATGGAAGCAGATGTAGACCAGTTGGAGCATAGAAACTGGGAACGATTGCCTTGTGATGAACAGTGCTTGGATACTTCAGAGTTATCTCATGAAAAGAAAAGTTCAGGCAATCTTGAATATGCAATGCCTTGTAGATTGAATGTGAAAAAAAACTGCGATAAACGCACAACAAAGTCACCGGATAGGTTAAAGGACCATGGTTTTGGTGAGGGTATGCCTAGGAGTAGGACTAGACTTAGAGATAAGGAAGGACTGTGTTCATATAGCAGTAACTTTCTTGCTCATAAAAAGTTCTCTTGCAGAAAGAAGCTACTCAGTCCTCTAGAATGTAAGGAATTTATACAGGAATGCATGGACAACATTAAGGCAGAAATGGAATCTGAGTTTTTGCAAAATGCTCAACCAAAAAAAATACTTCCTGATGAGATTGAAGATTTTATATGGCCTACAACTCCTAAGGATCAAATTGTTGTTGAAGAGAACAATGAAATCTGGAAAGAAATGGAACATTTGTTGACACAACTCGCCCTACAAGGACAAGACCAGGATCTGGATTCAAAATCCTTTGGTGGGATACTTTTTGAATGTGAAGAAGCTAGTGTGGAAATGTGCAAGCATGATTTCAAGCTGGATGAGCAGGTTGGAATTATTTGTCGGTTTTGCAATTTTGTGCACACTGACGTACGAGATATCTTGCCACCATTTATGATGCCAGATGTACGGAACTTATGTAATGGGTATCGGGGTAAAGAAGGATTCCCTGAGATAAAATCTTATATTTTTGGACTAAGCACTTTAGGCAGTGACATTGCATCTTTTAACCTAACATCATTTGGCGGGAGTGATACTATATGGGATTTGATACCGGAGCTCAGATTAAGGTTGTATGAACATCAGAAGAAGGCGTTTGAATTTATTTGGAAGAATGTTGCCGGATCTTTGAATCCTAAAGACATGGATTTTCAGTCTGGAAGCACAGGAGGTTGCATTTTATCACATACACCTGGCTCTGGGAAAACGTTTCTCTTGATTTCATTTATAATAAGTTATTTGACACTTTTTCCAAAGAGCAGACCTCTTGTACTCGCCCCCAAGATTGCAATTTGTGTATGGCGCAAAGAGTTTGAGAAGTGGAATGTTCAATTTCCATTGCACATTATACATCCGATCGATAGCTACAGGCAAGAAACTCTTGATTGCAAAGCAAGGGTCTCTGTTATGAATCAACGAAAGCCAAATATGAAAATGAGCCATGTTATGGACTGCCTAATGAAGTTAAAAAAATGGCATGAAGAATCGAGTATTCTTTTGATGAGTTACTCATCCTTTGCCTTAATGCAAAAAGAATCAACACATGAACACAGAAAGTTTATGGCGAAGGTGCTGAAGGAAAGTCCAACCCTTCTGATTTTAGATGAGGGTCACAATCCGCGCAGTACATTGTCAAAATTGAGAAATCTCTTAATGGACATGAAAACCCAATTTAGGATACTTTTATCTGGCACACTTTTTCAAAACAACTTTGAGGAATATTTCAACACTCTCTGTTTGGCTAGGCCAAGTTTTGTCAATGATGTTCTCAGAGAATTTGAACCTGACATTTTAGCAATGACGAGTCAGAGAAAAAAATCTGGTAAACGAAGCAAAGGGAATGAGAAATTAGCTAGAAAAATATTTGTTCAGAGAGTCGGTGAAAAAATATCATCTAGCATAGAGGGTGATAGGAAGCATGGTTTTCATGTGCTACACAAGATCACAAGTGGTTTCATTGATGTATATCAAGATGACAATTCAAGAAGGCTTCCAATGCTTCAAATCTACACTGTGGTGCTGATGCCAACAGATATACAACTTGAAATTTTAGCTAGATTGCACAGTCGTTTAAAACAAGCTGCTGGACATCCAATTGCCTTGGAGATTCTTATTTCTCTTGGTTCCATACACCCTTGGTTGGTAAGCACAATGGCTCATGCTAATAAATTTTATAGTGATAGTGATCTAAAGAACATTGAGAAACTAAAGGAAAATATCATGAGTGGTTCCAAGATGAAATTTATCTTTGATGTCGTGCACAAAGCCAGCGCCAAAGGGGAGAAAGTTTTGATCTTTTCCCGCAATATCTCCCCTATTAACTTACTGGTTGCATTCTTTGAGAATTTGCTAGGATGGAGTAAAGGGAATGAAGTCTTAGTGCTTCAAGGTGAACAGGAGCTTTCTCTGAGATCAAAAATCATGGATAAGTTTAATGGAGATGTGGGAAATAAATGTAAGCTGTTAATTGCATCAACATCTGCATGTGCTGAAGGTATCAGTTTGACTGCTGCATCACGAGTAGTTTTGTTGGATTCAGAATGGAACCCTTCTAAAACAAGACAAGCAATTGCACGAGCTTTTCGACCTGGTCAGGAGAGAGAGGTTTATGTGTACAAGCTATTGGCATCAGGAACATGGGAGGAGGAAAAGTATCGCAGCAATGAATGGAAGGCGTGGTTGTCGAATATGATTTTTACTGGACAATACATCAACTATACATCTAGTAGGAAAGTTGATTTTGTTGAGGACACAATATTGAGAGAGCTTATAGAAGAAGAGCATGGAAATATGTTTAAATTGATAATGAAACAAGACTAACAGCTTACGTTTTTTATAATATTTATTTTGCAATCGTTAAATTAAGATTATTGGAGGAAAATTCCGGTGGCCAACTTGAAGTTTTTGTTAATATGCTGGTCATTCTTTACTGGCAACAGGCTGCTCAGAGATCAGCATTATTCATTTGAATGTTCTGAAGAATGTCAGATCATTCAAAACATTTTTTGTTATTTTAATTTAATAGTGATTTTTTGCTCAAGATTGAACTTATTATTTATATTCATCGGAAGTAGATTTGACATGAAAGATTCAAAATGGAGTCTTCCCTTTTTGTCAGAAGATCCATGCCAATGTATATATTAAAGTATATGTTATAAAAGCTGCGTCACATATCAGTTCCATCTTAAGGTATTGGGAAATTTAATGCTCATCTTGTTCTGTAACGATAATATCTTTTTTTGCTTTTTCTATAATGC

Network for GWHGAAEX005754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	886	1103	1.30E-17
PF00271.30	Helicase_C	1251	1369	2.20E-13

Protein Sequence

>GWHPAAEX005754
MQDISTKNPICSTPFECFFQGSWHGTEFVSIINGKTFACIHQQGSAVEKVICWDSIRLRSRKANVCDCRHLLKVGADVCVLSSCWISDSSDLKSQQPLQLPMWYDAKIVSTKHSDHESGCSCFFSVIVYKKRAIDDHRKSRPYDRAETVTIDKIAILQKLNYKLTVDGLYQWSFSEDCITFKRSKLLSGAVSSQISWLVLLSVLKGIHFRIKSVQGNILYQILEKDQKSADCCKAFSLKPDAVLITMHFKQLLEYSRPVVKTHCLFGLRSVDAERYLSVGSELEEKVIAGMDSESDIEVLYDKKSLRRSKRQKIKPDWFTGQSFSEICVKKKHWARDKDRLDNIKVKQQNLQHNLLTSFLSTDFDELNHNIKSNKAQATNQLVHKEQKHLISGSAECAAAMQNFVCKTLADENENAEGRSQNPLKMDSEEICEEHPTKSQDRQKEHGANSLIQSDCLITYSTNLTCKSKRNRATDVVQLEHKNQKQFASLDNLEFVREKESSSSDECAEPSQILPRKKSLDENVEKEIFDEHPSKPQNRLEEHGLGDMIQPDHFNSNLLKNFDYKSKTNMEADVDQLEHRNWERLPCDEQCLDTSELSHEKKSSGNLEYAMPCRLNVKKNCDKRTTKSPDRLKDHGFGEGMPRSRTRLRDKEGLCSYSSNFLAHKKFSCRKKLLSPLECKEFIQECMDNIKAEMESEFLQNAQPKKILPDEIEDFIWPTTPKDQIVVEENNEIWKEMEHLLTQLALQGQDQDLDSKSFGGILFECEEASVEMCKHDFKLDEQVGIICRFCNFVHTDVRDILPPFMMPDVRNLCNGYRGKEGFPEIKSYIFGLSTLGSDIASFNLTSFGGSDTIWDLIPELRLRLYEHQKKAFEFIWKNVAGSLNPKDMDFQSGSTGGCILSHTPGSGKTFLLISFIISYLTLFPKSRPLVLAPKIAICVWRKEFEKWNVQFPLHIIHPIDSYRQETLDCKARVSVMNQRKPNMKMSHVMDCLMKLKKWHEESSILLMSYSSFALMQKESTHEHRKFMAKVLKESPTLLILDEGHNPRSTLSKLRNLLMDMKTQFRILLSGTLFQNNFEEYFNTLCLARPSFVNDVLREFEPDILAMTSQRKKSGKRSKGNEKLARKIFVQRVGEKISSSIEGDRKHGFHVLHKITSGFIDVYQDDNSRRLPMLQIYTVVLMPTDIQLEILARLHSRLKQAAGHPIALEILISLGSIHPWLVSTMAHANKFYSDSDLKNIEKLKENIMSGSKMKFIFDVVHKASAKGEKVLIFSRNISPINLLVAFFENLLGWSKGNEVLVLQGEQELSLRSKIMDKFNGDVGNKCKLLIASTSACAEGISLTAASRVVLLDSEWNPSKTRQAIARAFRPGQEREVYVYKLLASGTWEEEKYRSNEWKAWLSNMIFTGQYINYTSSRKVDFVEDTILRELIEEEHGNMFKLIMKQD

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.170
SRP064423	SRR2545915	Juvenile tuber	9.400
SRP108465	SRR5643513	five period of Gastrodia elata	3.550
	SRR5643514	five period of Gastrodia elata	4.530
	SRR5643515	five period of Gastrodia elata	4.330
	SRR5643524	five period of Gastrodia elata	4.260
	SRR5643525	five period of Gastrodia elata	1.150
	SRR5643528	five period of Gastrodia elata	1.030
	SRR5643658	five period of Gastrodia elata	1.300
	SRR5643659	five period of Gastrodia elata	3.100
	SRR5643660	five period of Gastrodia elata	3.130
	SRR5643661	five period of Gastrodia elata	3.410
	SRR5643662	five period of Gastrodia elata	2.540
	SRR5643663	five period of Gastrodia elata	2.710
	SRR5643664	five period of Gastrodia elata	2.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.880
SRP279888	Gastro	Gastrodia elata tuber	2.80
	Juven	Juvenile tuber	3.27
	Mother_Gastro	Mother tuber of Gastrodia elata	4.33
	Mother_Juven	Mother tuber of Juvenile	5.34