Gene detail

Detail information of GWHGAAEX005755/evm.TU.scaffold_17.113_evm.TU.scaffold_17.112

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428307238\|ref\|YP_007144063.1\|	7.00E-39	hypothetical protein Cri9333_3741 [Crinalium epipsammum PCC 9333]
nr	gi\|672176775\|ref\|XP_008808463.1\|	0	PREDICTED: putative ion channel POLLUX-like 2 [Phoenix dactylifera]
Swissprot	tr\|Q940Y9\|POLL2_ARATH	0	Putative ion channel POLLUX-like 2
trEMBL	tr\|M0T387\|M0T387_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P01390_001}
TAIR	AT5G02940	0	Protein of unknown function (DUF1012)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	3887959	4023315	-

Transcript Sequence
>GWHTAAEX005755 AAAAAATAAAGGCGTAGTTGCTAAACTTGATGTTGTAGAACTAGAGCTCACAGGATGCAGCGGGGAGGGCTTGCGAGTTGTGGATGAGGATACACAGAGGAGGTAGGAATTATGGTGATGGCGTCTCAGATTCATTGCGCGGTTTCATGGAGCTCTCGGTTTCTTATCGTAACGGAAGCCAGAAAAACTCCCGCCGCGGTGCAGAGGTGTTCACCATTGAATTATTCCCTCCTACGGCCTTTAGTGGCATGTGCTTGTTTTCCTTGGTTAACACACAAGATTTTTCCAAGCTGCCAGTTAAACTACTATTTATCCAAACCCCCATTTTCAAAGTCCATTTGCTATGTTTTTCTGACTAGTAAGATGGTGAAGTTATCGGTTCACAAGCTTGGTAGTGGAAACATGCTCTTGGCTTGTATGTCCAATTCAATCAACAAACCCATGCCTCTTCAGTTGGATGTATCTCTCCCTTCTTTTGAAGATATTAGCTGGAGTCTCTCTAGGCTGTATTATTTATTCAACACGCAGCTTGACAGGAATATTGGCACGTTTTTTGTGGCCTTACTTGCTGCATGTTTCTCGTTCGTCATTGTTGGTGGTTTTTTATTTTACAAGTTCAGGAGCAAGACACAATCCCTAGAAGATTGTTTTTGGGAAGCATGGGCTTGCCTTTGTTCTTCATCCACTCATTTGCGGCAAAAAACACGTGATGAACGTATTCTTGGTCTAGTCTTGGCCATTTGGGGTATATTGTTCTATTCTCGGTTGCTGAGCACAATGACAGAACAATTCAGGTACAATATGCAAAAGTTCCGAGAAGGGGCACAGCTACAAGTCATGGAAACTGATCATATAATAATATGTGGAGTCAACAGTCATCTGATGTTTATATTAAAGCAACTGAATAAGTTCCATGAATCTGCTATTCGTCTGGGTACCGCTAAAGCAAGGAAGCAACGAATTCTTCTCTTGTCTGATCTCCCAAGGAAGCAAATAGAGAAACTCGGTGATAGTATTTCTAAGGACTTGAAACATATTGATGTCCTTACGAAAAGTTGCAGTCTTAGCATGACAAAATCTTTTGAAAGAGCAGCAGCAAGCAAAGCACGTTCAATCATTATTTTGCCAACAAACAATGATCGGTATCAAGTAGATACTGATGCATTTCTCTCTTTATTAGCTTTGCAACCTTTACGGAAAATAGCTTCTGTTCCAACCATTATAGAGGCCTCAAATTCTGGCACGTGTGATCTTCTGAAATCAATCGCAGGATTAAATGTTGAGCCTGTGGAAATGGTTTCATCTAAACTGTTTGTTCAGTGTTCACGGCAGAAGGGACTCTTAAAAGTTTACCGGCATCTTCTTAATTATCGAAAAAATGTATTTAGCCTTTGCAGCTTGCCAAATATAATTGGAATGCAGTATAAGCATGTACGACAAGGAGTTAATGAGGGAGTAGTCTGTGGTCTCTTTAGGTCTGGGGAAATAAATTTCCACCCAAGAGACGAAGAAGAAATCAGACATACTGATAAACTTTTGCTTATTGCACCGGTTTATGGGAAACGAAAGGAACAAGTTTTACTCCCTCGAACTACTATGGAATCGACTGTTTCTTATGGTAACCCAAAGGTTATAGAGGAAGGTAGTTCTTCTAAAGTCTCGGAATTTAGGAAGGCGCGCTTTGACATGATTGTGAAGCGTCCATCAAAACCAACATCCAAGGCAAGTGATTGGAGTCTTGGACCCAAAGAGTGCATCCTTATGGTTGGATGGAGACCAAATGTTTCTGCAATGATCAAGGAATATGACAATTATCTTGGACCCGGTAGTATAGTGGAAATCCTTTCAGAAGCTACCATCAGTGAAAGAAGCGGAGCTGTGAATCCTACAGTACCCACTGAATTGAAAAATATTAAAGTTCAACATAGGGTTGGGAGTCCAATAAACTATGAAACATTAAAGGAGGCTATTTTGAATATCAGGAATGCATTCAAGGCTACAGAAGATATTCCTTTATCAGTTGTTGTAATATCTAATAGAGAGTGGTTCGCCAGAGATCCTTCTGAAGCTGACAAGCATTCAGCATATGCACTCCTCCTTGCCGAAAGCATTTGCAATAAGTATAAAATTAAGGTTGAAAATCTGGTTGCGGAGATCATTGAGACTAGACTGGGGAAACAAATTTCGAGAATACGCCCATCTCTTTCTTTTATCGGTGCCGAGGAGGTGATGAGTCTTGTAACCGCTCAAGTGGCTGAGTGCCGGGAGCTGAACCAGGTCTGGAAAGACATTCTGAATGCTGAAGGGGATGAAATATATATAAAGGAAATTGGCTTTTACATGGAGAAGGGTGAGACTCCATCATTCAAGGAGCTTTCTGAGAGAGCCATTTTGCGCCGTGAAGTAGCGATTGGTTATGTCAAGGGGAATAAGCAGGTCATAAATCCGAGCAAGAAATGGGAGCAGATCGCATTTGATATGACCGATTCGCTCATCGTGATAGCCGAGCCGGAGGGCCTGCACTCAAAAAATTCTTAAGGCAAATATTGCTCACTTTTTTTCTTTTTAATTTTTCCAATGATATTATTGTGCAGGACAAGCAGCCTTTTCTCCAGAATAAAGGAGAATAGGAGCTTTTTTCTAATTTTAAAAATTCTGTTAAATCCTGTGTTGTACCACTGAAAGCCTCTCTCGTATAGGAATTTGTTGAGCTTAAATTGTATGTATGTATCACATATCCATAAATAGCCCCAATCTGCACCTAAAGTGAAAATAAATTGATTTTTTAATGGCTCTACATTCGTAACTCCTAAATCAT

Network for GWHGAAEX005755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06241.11	Castor_Poll_mid	394	491	1.70E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.100
SRP064423	SRR2545915	Juvenile tuber	19.560
SRP108465	SRR5643513	five period of Gastrodia elata	8.440
	SRR5643514	five period of Gastrodia elata	12.040
	SRR5643515	five period of Gastrodia elata	10.240
	SRR5643524	five period of Gastrodia elata	9.990
	SRR5643525	five period of Gastrodia elata	10.680
	SRR5643528	five period of Gastrodia elata	7.860
	SRR5643658	five period of Gastrodia elata	12.210
	SRR5643659	five period of Gastrodia elata	9.570
	SRR5643660	five period of Gastrodia elata	10.160
	SRR5643661	five period of Gastrodia elata	9.260
	SRR5643662	five period of Gastrodia elata	8.620
	SRR5643663	five period of Gastrodia elata	8.980
	SRR5643664	five period of Gastrodia elata	9.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.530
SRP279888	Gastro	Gastrodia elata tuber	10.29
	Juven	Juvenile tuber	7.45
	Mother_Gastro	Mother tuber of Gastrodia elata	7.37
	Mother_Juven	Mother tuber of Juvenile	5.90