Gene detail

Detail information of GWHGAAEX005757/evm.TU.scaffold_17.118

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2053	Mitochondrial inheritance and actin cytoskeleton organization protein
nr	gi\|672179585\|ref\|XP_008809963.1\|	PREDICTED: phagocyte signaling-impaired protein isoform X1 [Phoenix dactylifera]
trEMBL	tr\|B9I6L1\|B9I6L1_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE95879.1}
TAIR	AT5G58450	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	4227029	4265091	+

Transcript Sequence
>GWHTAAEX005757 TTCACAAATTACCGGTCCACTAAACAGCATGACGACGACGACGACGACCATTTGAAGTCATTTCCGCTGGGGCTTCCCCCTCATTTGTCGCCTAAATGCCCTGAATCAAAGAAGACAGAACCCGACGCTAACCTAATCTCTTTAACCCGAATTCTAAAACCTCTGTTCCAATGGCTTCTAAGCTTGGGCACGCCGGAGGGATCCCCGAGCGACGGGTGCGACCGATATGGGATGCTGTTGATTCTCGTCAGTTTAAGACTGCATTTAAGCTTTCTGCCGCCCTTCTAGCTAAATATCCAAATTTTCCGTATGCTCTTGCACTCAAGGCATTGATTTTGGAAAGGATAGGGAAGCTTGATGAAGCACTAAGTGTTTGCTTAGAGGCCATGGAGCTCTTGCATTCGAGTAATTTGAATGCAGTTCACGTTGATGATCTCACCCTCAGCACTTTACAGATTGTGTTTCAAAGGCTTAACCGCTTGGATCTGGCAACTTCATGCTATGAACATGCTTGTGGAAAATTCCCAAGTAACTTTGGTTTACTGACTGGACTTTTTAACTGTTATGTGCGCGAGTATTCATTTGTGAAGCAACAACAGACTGCCATAAAGTTATACAAGATTGATGCTGAAGAAAGTTACTTGCTTTGGGCAATATGCAGCATTCAATTGCAGGTACTCTGCAGGTCTGGGGGTGAGAAATTGCTATCCCTTGCTGAAGCTTTACTTAAGAGGCATATAGATTCACATAGCCTGCGTGAGCCCGAAGCTGTTGTCATGTACATTTCAATTCTTGAACAGCAAGGCAAGTATGTGGACGCTTTGGACATTCTTTCTGGAAATTTAGGTTCTCTTATAGGAATTGAAGCTGAAAAGTTACGTTTGCAGGGTAGGCTCCTTGCTCGTGCATGTAATTTTACTGCTGCTGCTGAGATGTACCAGAAGGTCTTAGAAGCACGTCCTGATGATTGGGGATCATTCCTCAATTACTTAGGCTGTTTGTTAGAGGCTGATTTCTGTTGGTCGACAAGTGGTTCTGGTCAACTATGCTCATCAAATAATATTGATTTTCAAGTCTGCAAGTCAACGGACCATTCTGCAGAAGTGTTTGGTTCACGTATGGCTAGTGCATCGTCTTTTGTACAAAAGTTGCAACTTGAAGTTGATGAAGGCCTTGCTAGATGCCCGTGCTTGGCATCCATTGAAATAGAAAGGCAATACCGTCTTAGAGGAAAAGTTGATGCCAAGTTAATGGAAGCTTTGTTGAATTACTTCCACAGGTTCGGTCATTTGTCTTGCTTTGCTTCTGACTTGGAGTCCTTTTCTTCAACATTGACTCCGAATGAGAGAGTTGAATTATTAGAGAAGTACGTAGAAATTTCTGAAACTTTGCCCAGCGCGCCATTAAAAAAGATGTGTCAGGCTATTACAATTTTTAAACTTAAAGAGCTTTTTGGCTTCACAACAATGCTCCCGGCTGACGAACTTGAAGAAACTGTTGTAAAGATGGTGGATATGTATTGTAAAAATCTTGCGCTGTCAAGTGAACTGGATCCTCAGGAGAATGTATATGGTGAAGAACTCTTACATATGGCTAGCAGCACTCTTGTCATGCTTTATTGGCGTACAAGAAACTTTAGGTACTTATTAGAGGCGCTTCTAGTTTTAGAGTTTGGCTTGAACATTCGACAATACGTTTGGCAATACAAACTGCCTTTGGTGCATTTATATTCATTTGTTAATGCACTACCATTGGCATACGAATGGTATGGAACTCTGGAAGCTAAGAACATCTTATTGGAGACTTCTTCCCACCATATTTTGCCTCAGTTATTGGTCTCACCCCTCTGGTTAGAAACCTGTGTTCTTCTGAAAGATTATCTCAAGTTTATGGATGATTATTTAAGAGAAGCTGCTGATCTCACTTTTTCGGCGTATAGCCACCGTAATTACTCCAAAGTAATTGAATTTGTTCAGTTCAAAGAACGTTTAGAGCACTCAAATCAGTATTTAGCAGGAAGGATTGAGTATTGGATTTTACAATTGAAACAGAAAACAGATACCCTTGAAGAAGTTGAGTGCATTCTTGAAGAATTGAACTATGGAAAACAGGTGCTAGAGTTGGCCAGCGATGAAAAACTTAAGTCCTTAACATTTAATGAAGATCTTCAGACGCGACCTTGGTGGTCTCCCAGTTCTCATATGAACTACCTTTCAGAACCTTTTGATGGAGTATCTGCATACACTCTAGAAAACTTGTATAAGCGCCAAGCATGTGAGAACAGCAGCAGCATAGTGAGGGATGCCATTGCAAGGAAATCCCTCATCCCTCGTTTGATCCATCTTTCGATTCAGTCAGCTGCCATTTCACTGAAGGAAGCTGTTGCCGGGGATACCGCTCCTGGAAAAGAAGCTAATAGCAGCGAGGAGCTCAAGTTTCTGCTTGAAAGGTATGCAGCAACCATCAGCATGTCATTTGATGATGCAGTAAAGCTGATCCAGGAGATCTCAGAGGGCCGAAGATCGTTCAAGGAATTAGACAAGGAGGCGGTGGTAGATTGGATGAACTTTGCAGTGTTCCTGAACGCATGGAAGCTATCCTCGGGCCATGACAATGCCATAATGAAATCATGGGATGCGGTGGAGAAGATGATGACGAAGATCTGTTCATCGGAGCAGCTGCTGACGGGTCTCGCAGAAGAAAGAACGAGCGAGGTTCTGGTTCGTCTGATAACTGAGCCCTTGAGCTGGCACGGACTGGTGATCCAAGGCTGCGTGAGAGCTGTGTGGCCTTGGAGCAAGAAGAAAAAGAAGAGCGGCATGGCGGGCGAGCATTCGAGCTCCCCTCGGCTTCTTCTTGAGGCGATCGGCAATTCTGCAGAGCGGCTGCGCGAGGGGATAAGCGAGGTTCGCAGATGGCTGGAGGGGCGAATGGGCGAGGATTCGAGATTGGAGTCTCTGATGTCTCGGCTGAAGGAGGAGGATCGGCGGGGCTCCGCCCTAAGCGTTCTGGATGAGTACGCGTCCTCTTCTTGCAGCCGTGCGGCGGAATTGGGGGAGAGGATATGCGGAGCGCTACAGCAGTGGAATTCCGCTGAGGCCATGAGGAAGCTCGCAAGATCGCAGGATTCGTCGCTCCTCAAGTTTAGGGAGATCTGCGATTCCAAGATCAGGATGTTCGACCTCATCAAACGCCAGTGCTCGCCCCCTTTTATCTAAAGAATCCCCGGAGACAGCGGCAAAACTGTCTTTCCAGCTTTTTTTTAAAACATTTGTTTGTTGTAGTTTATTTTTTTCTCGAGAATATTTTTTATTTTTATTTTTGCATTGTTGAGGCATGTAATTAACTTGTTAATTATAAATTTTTATTATTTCTAGGCTTTTTTTTTTTATAATTTTAACTAATCTGTTTTTATTTTGGAAATTTTGATAATTTATGCAAAATTTGAAGTTTTTGATTAGAGCAATAATTGTTTGATCAAATTTAGCTTCTAATCAAGCAATGGTCATCGTAGCAGACTTAATTTTTTGAAAAAACAGTTGATAAAATATAATCATTGTGTTATCTTTATATATATGTGCATGCATTCAATATTATAAATTTTCAAATTTATGTAAATAAATAGCTAATATGTTGGGGCTAGACTTGGGCACGTGCCCAAGGTCCTGCCTAG

Network for GWHGAAEX005757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09797.8	NatB_MDM20	305	664	5.60E-45

Protein Sequence

>GWHPAAEX005757
MASKLGHAGGIPERRVRPIWDAVDSRQFKTAFKLSAALLAKYPNFPYALALKALILERIGKLDEALSVCLEAMELLHSSNLNAVHVDDLTLSTLQIVFQRLNRLDLATSCYEHACGKFPSNFGLLTGLFNCYVREYSFVKQQQTAIKLYKIDAEESYLLWAICSIQLQVLCRSGGEKLLSLAEALLKRHIDSHSLREPEAVVMYISILEQQGKYVDALDILSGNLGSLIGIEAEKLRLQGRLLARACNFTAAAEMYQKVLEARPDDWGSFLNYLGCLLEADFCWSTSGSGQLCSSNNIDFQVCKSTDHSAEVFGSRMASASSFVQKLQLEVDEGLARCPCLASIEIERQYRLRGKVDAKLMEALLNYFHRFGHLSCFASDLESFSSTLTPNERVELLEKYVEISETLPSAPLKKMCQAITIFKLKELFGFTTMLPADELEETVVKMVDMYCKNLALSSELDPQENVYGEELLHMASSTLVMLYWRTRNFRYLLEALLVLEFGLNIRQYVWQYKLPLVHLYSFVNALPLAYEWYGTLEAKNILLETSSHHILPQLLVSPLWLETCVLLKDYLKFMDDYLREAADLTFSAYSHRNYSKVIEFVQFKERLEHSNQYLAGRIEYWILQLKQKTDTLEEVECILEELNYGKQVLELASDEKLKSLTFNEDLQTRPWWSPSSHMNYLSEPFDGVSAYTLENLYKRQACENSSSIVRDAIARKSLIPRLIHLSIQSAAISLKEAVAGDTAPGKEANSSEELKFLLERYAATISMSFDDAVKLIQEISEGRRSFKELDKEAVVDWMNFAVFLNAWKLSSGHDNAIMKSWDAVEKMMTKICSSEQLLTGLAEERTSEVLVRLITEPLSWHGLVIQGCVRAVWPWSKKKKKSGMAGEHSSSPRLLLEAIGNSAERLREGISEVRRWLEGRMGEDSRLESLMSRLKEEDRRGSALSVLDEYASSSCSRAAELGERICGALQQWNSAEAMRKLARSQDSSLLKFREICDSKIRMFDLIKRQCSPPFI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.930
SRP064423	SRR2545915	Juvenile tuber	11.870
SRP108465	SRR5643513	five period of Gastrodia elata	13.370
	SRR5643514	five period of Gastrodia elata	12.830
	SRR5643515	five period of Gastrodia elata	13.060
	SRR5643524	five period of Gastrodia elata	12.690
	SRR5643525	five period of Gastrodia elata	14.310
	SRR5643528	five period of Gastrodia elata	12.160
	SRR5643658	five period of Gastrodia elata	13.370
	SRR5643659	five period of Gastrodia elata	16.690
	SRR5643660	five period of Gastrodia elata	16.970
	SRR5643661	five period of Gastrodia elata	17.180
	SRR5643662	five period of Gastrodia elata	14.870
	SRR5643663	five period of Gastrodia elata	15.180
	SRR5643664	five period of Gastrodia elata	18.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.190
SRP279888	Gastro	Gastrodia elata tuber	23.69
	Juven	Juvenile tuber	19.56
	Mother_Gastro	Mother tuber of Gastrodia elata	24.26
	Mother_Juven	Mother tuber of Juvenile	21.77