Detail information of GWHGAAEX005762/evm.TU.scaffold_17.130
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743782079|ref|XP_010921056.1| | 4.24E-169 | PREDICTED: probable WRKY transcription factor 33 [Elaeis guineensis] |
| Swissprot | tr|Q8S8P5|WRK33_ARATH | 7.00E-106 | Probable WRKY transcription factor 33 |
| trEMBL | tr|A0A096XCA7|A0A096XCA7_9ASPA | 1.00E-160 | WRKY transcription factor {ECO:0000313|EMBL:AHF55741.1} |
| TAIR | AT2G38470 | 1.00E-105 | WRKY DNA-binding protein 33 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 4653795 | 4656864 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005762
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 199 | 255 | 5.10E-24 |
| PF03106.14 | WRKY | 359 | 416 | 1.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13424 | WRKY33 | MAPK signaling pathway - plant | map04016 |
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.580 |
| SRR2545915 | Juvenile tuber | 29.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.560 |
| SRR5643514 | five period of Gastrodia elata | 28.880 | |
| SRR5643515 | five period of Gastrodia elata | 116.180 | |
| SRR5643524 | five period of Gastrodia elata | 32.020 | |
| SRR5643525 | five period of Gastrodia elata | 68.750 | |
| SRR5643528 | five period of Gastrodia elata | 154.150 | |
| SRR5643658 | five period of Gastrodia elata | 47.040 | |
| SRR5643659 | five period of Gastrodia elata | 110.190 | |
| SRR5643660 | five period of Gastrodia elata | 44.450 | |
| SRR5643661 | five period of Gastrodia elata | 75.950 | |
| SRR5643662 | five period of Gastrodia elata | 96.530 | |
| SRR5643663 | five period of Gastrodia elata | 68.480 | |
| SRR5643664 | five period of Gastrodia elata | 203.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 138.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 100.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 92.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 130.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 126.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 178.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 216.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 131.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 148.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 51.06 |
| Juven | Juvenile tuber | 13.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 363.05 | |
| Mother_Juven | Mother tuber of Juvenile | 223.05 |