Detail information of GWHGAAEX005770/evm.TU.scaffold_17.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|182412446|ref|YP_001817512.1|2.00E-171class III aminotransferase [Opitutus terrae PB90-1]
KOGKOG14040Alanine-glyoxylate aminotransferase AGT2
nrgi|743788486|ref|XP_010922677.1|0PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q9SR86|AGT23_ARATH0Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBLtr|M0SWT5|M0SWT5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08560_001}
TAIRAT3G088600PYRIMIDINE 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001851985715227258-
Transcript Sequence

Network for GWHGAAEX005770

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.20Aminotran_3804725.70E-97
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00827AGXT2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity
GO:0008483Molecular Functiontransaminase activity
GO:0030170Molecular Functionpyridoxal phosphate binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.230
SRR2545915Juvenile tuber35.700
SRP108465SRR5643513five period of Gastrodia elata28.720
SRR5643514five period of Gastrodia elata52.160
SRR5643515five period of Gastrodia elata33.950
SRR5643524five period of Gastrodia elata37.500
SRR5643525five period of Gastrodia elata8.960
SRR5643528five period of Gastrodia elata9.180
SRR5643658five period of Gastrodia elata11.620
SRR5643659five period of Gastrodia elata21.730
SRR5643660five period of Gastrodia elata19.720
SRR5643661five period of Gastrodia elata17.400
SRR5643662five period of Gastrodia elata26.540
SRR5643663five period of Gastrodia elata21.910
SRR5643664five period of Gastrodia elata26.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.980
SRR6049655Rhizomagastrodiae_C368-T10_good_166.080
SRR6049656Rhizomagastrodiae_C368-T07_good_145.410
SRR6049657Rhizomagastrodiae_C368-T07_good_131.680
SRR6049658Rhizomagastrodiae_C368-T04_good_144.190
SRR6049659Rhizomagastrodiae_C368-T04_good_142.520
SRR6049660Rhizomagastrodiae_C368-T01_good_129.770
SRR6049661Rhizomagastrodiae_C368-T04_good_140.440
SRR6049662Rhizomagastrodiae_C368-T01_good_167.790
SRR6049663Rhizomagastrodiae_C368-T01_good_149.450
SRR6049664Rhizomagastrodiae_C368-T10_good_196.670
SRR6049665Rhizomagastrodiae_C368-T10_good_196.670
SRP279888GastroGastrodia elata tuber 15.22
JuvenJuvenile tuber20.07
Mother_GastroMother tuber of Gastrodia elata 21.55
Mother_JuvenMother tuber of Juvenile 12.52