Detail information of GWHGAAEX005776/evm.TU.scaffold_17.157
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-133 | FOG: PPR repeat |
| nr | gi|672167286|ref|XP_008803598.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 6.00E-134 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|M5Y0G5|M5Y0G5_PRUPE | 1.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:EMJ27718.1} |
| TAIR | AT5G66520 | 2.00E-133 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 5655977 | 5657761 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005776
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 70 | 118 | 1.30E-07 |
| PF12854.6 | PPR_1 | 168 | 196 | 1.90E-06 |
| PF01535.19 | PPR | 202 | 228 | 2.00E-07 |
| PF13041.5 | PPR_2 | 302 | 348 | 3.70E-09 |
| PF01535.19 | PPR | 376 | 400 | 0.27 |
| PF01535.19 | PPR | 446 | 471 | 0.42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.430 |
| SRR2545915 | Juvenile tuber | 0.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.760 |
| SRR5643514 | five period of Gastrodia elata | 0.970 | |
| SRR5643515 | five period of Gastrodia elata | 0.960 | |
| SRR5643524 | five period of Gastrodia elata | 0.630 | |
| SRR5643525 | five period of Gastrodia elata | 0.130 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.250 | |
| SRR5643660 | five period of Gastrodia elata | 0.680 | |
| SRR5643661 | five period of Gastrodia elata | 1.180 | |
| SRR5643662 | five period of Gastrodia elata | 0.920 | |
| SRR5643663 | five period of Gastrodia elata | 0.640 | |
| SRR5643664 | five period of Gastrodia elata | 0.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.81 |
| Juven | Juvenile tuber | 0.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |