Gene detail

Detail information of GWHGAAEX005778/evm.TU.scaffold_17.160

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|32476268\|ref\|NP_869262.1\|	1.00E-33	serine/threonine-protein kinase pknH [Rhodopirellula baltica SH 1]
KOG	KOG0192	8.00E-165	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
nr	gi\|743788689\|ref\|XP_010922729.1\|	0	PREDICTED: serine/threonine-protein kinase HT1-like [Elaeis guineensis]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	2.00E-71	Serine/threonine-protein kinase HT1
trEMBL	tr\|M0RF65\|M0RF65_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P03880_001}
TAIR	AT5G01850	8.00E-165	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	5758141	5796447	-

Transcript Sequence
>GWHTAAEX005778 CACTATTCAAGTTAAATTTATTTTATAAAAAAACAAAAAAAACTCCAATGGTCGATCTCGCGGTATCGCGGAGAGAAATTGTCCAAACGCGGCCACTGATACTGCAATTAAGCTGCGTTAATGCGCGCAGGCGGCGCAGCCTTGTCTAATCTAGAATATCTTCCTTTGCCTTCTCCGTTTGCGAGATCGAGTCGAGAGGGATTGAGGCTTAGTGGCAGAGGGATAGGACCCGGAAAATGATTGGGATTAGGGTTAGGGTTTTGATACAGCTTTGAGGAGTGACAATTTTATTAGACGGAGTTTATGGAACAGGAAGGAAGCTTTCCCGAGCTCAGGTAGCTCAACTTCTGAACTCCTTTAGGAATTTATCTCGCATGTTACAGTAATATGCTTAGTGGTTCATGGATTTCTGGATGATGACTGGATGAGTTGTTGTCAACTATACATTTTCTACTGAAGATTCTGAGGGAGCCAGCGCTTTTGTCGTATATAATTTTCCCGAAGCAGTAGGCTTCTAGATTGAATCTGTGCTTGATTTGGTCTGATGAAGGCTTTAACATTTATCTACAGGGACTGGATTTCTCTGGGCGTTGATATCCATAAGTGCCTATATATTGGTGTTAATTAAAATCTGCTGCATAATCTTAACCTGGGCATACTCGGAGTTGCTGTTCTAGTTTCGTTAAAGTCTTGAAGTTTATCAAATGATTTTTCTCACGGTTTTATGCAGCATGACGTTCTGATTGCTTCGCAGGTTTCAGGGGACTCTAAAGAGAGGGCTATTTGTTTAGTTAGTTTTACCAAGAGATGAGTTACGGTAGATACGCACAAAATGGCCGAATGGAAAAAGGTGAGTCTGATAATTGTAAACCAAACCAAGCATCTGATTTTGGACTATCATGGCTGGCAATCTTTTGACAGCAACTGCCCAATTCCAGTTGCAAGCGCGGAGATTGATAAAAAGCTTTTGATTGATCCGAAGAAGCTCTATATAGGGTCAAAGATTGGTGAAGGCGCTCACGGCAAAGTTTACGAGGGAAAATTTGGCGAACAAGTTGTAGCTCTTAAACTCATCAATGGTGGCAGCACGGCTGAGGAAAAAATGACAATTGAGGCTCGTTTTATTCGAGAAGTTAATATGATGTCTAGAGTGAAGCATGAAAATCTTGTTAAGTTCATTGGAGCTTGTAAGGACCCTATCATGGTTATTGCTACAGAGTTGCTACCTGGGATGTCTTTAAAAAAATACTTGGAAAGTATGAGGCCAAAACAACTAGATCTACGTTTAGCAACTAGCTTTGCAGTTGATATTGCTCGTGCAATGGAATGTCTGCATGCAAATGGGATAATACACAGAGACTTAAAACCTGATAATTTGCTTCTTACTGCTAATCAAAAAAATGTGAAGCTTGTTGATTTTGGACTGGCAAGGGAAGAGACGGTAACAGAGATGATGACCGCTGAAACAGGGACATACCGGTGGATGGCTCCCGAGCTGTACAGTACTGTTACATTGCGCCGTGGCGAGAAGAAACACTATACCAACAAGGTTGATGTATACAGTTTTGGCATTGTGCTATGGGAGTTACTTACTAACCGAATGCCATTCGAAGGGATGTCCAATTTACAGGCAGCTTATGCTGCTGCTTTCAAGCAAGAAAGACCAGTGATACCAACTGACGCACCCGCAGACTTGGGCTTCATCATAAGATCTTGCTGGGTTGAGGAACCCAATATGCGTCCCGGCTTCAGCCAAATCATCCGCATGCTCAATACCTTCCTCTTCTCTCTATCCCCGGCTTCTCCGCAGTCCAATGCTTCTTCGGCAGTCGGCAGCAGCAGCAACGGCGGCAGCGAAAATGCTCTTACCACAGCGTCTGCTCGTTCTGGCCGAAAGCTCTCTTTTCTCCGTCAGCTGTTTGCGGCGAAAAGGGCGAGAAATAGTCGGACAGCGTGAGCCAGCGGCCTTATGCTGGGATCTGCAACACCGGAGCATTATATAAATTTACACATATATATATATATATACTCTTTGGTGACTTCTACACTGGAAACCCCTCCAGAAAGTGATGCATGAAAAGTACAGAAGAAAATTGCACAAAAATCTTATGAACCAAGTGGTGCACAGTAAGCTGTGAGAGGCTTTTCTTCTCATGAATAATAGTTGGTGTGATGTTGGTTTATAAGATTTTTGCAAAGAAACTAAAGCCTATAGAAAGCCTATAGATGGGGATTTATCAATCTCAGACCTAATTTTTTTCTTAAAATTTTTGGTAGCTCTCTGTATATATTATCCAAAATCGGTGCTATAAATTAGCTCCTCCATCTCATAGTTTTTTTGTTTTTGATATATTTTGTATATAAGATACCATATATAATTCTATAATTTTGTTCTCTGTTCGTTTTAATCAGCAATTGCCTGTGTGAGGGTGATATGAAATTCCTATTAAATTTGGTTCTGAATCGATTTTTTTATTTATTTTTAATTTTTATTCATATAGAAAATGCGGATTGCATTTGAATTCAATTTACAGTCGGGCTCTCAGTTCCTTGTTGAAAGGTAGGTTGAAGCTGTTAAAGCAAGAAATCCAGGCTTCCCCTCTCGACTTCCAGATGGATCCCTCCGGCACGTGGGCGTGTTCGAGTGTCCGGAAGCAATGCAGGCTTCCCCGCCGGATGGATCCCTCCGGCACATGGGCGTGTTCGAGCGCCCGGAAGCAACCCAGGGGGCTTCCCTGCCGGATGGTCCCTCCTGCACTTGGGCGTGTTTGAGCGCCGGGAAGCAATCCTGGCTTCCCCTCTCGACTTCCGGATGGATCCCTCTGGCACTTGGGCGTGTTCAAGCGCCTGGAAAAATCTTTTTGAAAGCTTAAAGCATGGTGAACTGCCTTTTTTTCGCAAATTTATTTTTTCAAAACCACTTGATTTCAAACAAATTGGCTATGTATTTGTTGAAAGTATATTTATATACTTTTTGGATATATTTGAAAGAAATATATTATTAATTTTAGGGGATAAATTTCTTAAA

Network for GWHGAAEX005778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	54	313	1.60E-57

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.710
SRP064423	SRR2545915	Juvenile tuber	19.130
SRP108465	SRR5643513	five period of Gastrodia elata	16.870
	SRR5643514	five period of Gastrodia elata	17.690
	SRR5643515	five period of Gastrodia elata	17.850
	SRR5643524	five period of Gastrodia elata	20.290
	SRR5643525	five period of Gastrodia elata	19.520
	SRR5643528	five period of Gastrodia elata	18.230
	SRR5643658	five period of Gastrodia elata	24.400
	SRR5643659	five period of Gastrodia elata	17.000
	SRR5643660	five period of Gastrodia elata	17.850
	SRR5643661	five period of Gastrodia elata	16.550
	SRR5643662	five period of Gastrodia elata	22.410
	SRR5643663	five period of Gastrodia elata	20.190
	SRR5643664	five period of Gastrodia elata	20.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.260
SRP279888	Gastro	Gastrodia elata tuber	24.66
	Juven	Juvenile tuber	20.72
	Mother_Gastro	Mother tuber of Gastrodia elata	21.50
	Mother_Juven	Mother tuber of Juvenile	25.16