Detail information of GWHGAAEX005780/evm.TU.scaffold_17.163


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743788703|ref|XP_010922732.1|0PREDICTED: MACPF domain-containing protein CAD1-like [Elaeis guineensis]
Swissprottr|Q9C7N2|CAD1_ARATH0MACPF domain-containing protein CAD1
trEMBLtr|V4S5S5|V4S5S5_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR42803.1}
TAIRAT1G296900MAC/Perforin domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001858261035841519+
Transcript Sequence

Network for GWHGAAEX005780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01823.18MACPF1073192.20E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.840
SRR2545915Juvenile tuber9.240
SRP108465SRR5643513five period of Gastrodia elata15.660
SRR5643514five period of Gastrodia elata14.720
SRR5643515five period of Gastrodia elata13.950
SRR5643524five period of Gastrodia elata14.310
SRR5643525five period of Gastrodia elata17.900
SRR5643528five period of Gastrodia elata13.630
SRR5643658five period of Gastrodia elata15.400
SRR5643659five period of Gastrodia elata16.440
SRR5643660five period of Gastrodia elata18.050
SRR5643661five period of Gastrodia elata15.770
SRR5643662five period of Gastrodia elata16.990
SRR5643663five period of Gastrodia elata17.410
SRR5643664five period of Gastrodia elata15.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.180
SRR6049655Rhizomagastrodiae_C368-T10_good_115.870
SRR6049656Rhizomagastrodiae_C368-T07_good_117.360
SRR6049657Rhizomagastrodiae_C368-T07_good_116.270
SRR6049658Rhizomagastrodiae_C368-T04_good_119.080
SRR6049659Rhizomagastrodiae_C368-T04_good_115.680
SRR6049660Rhizomagastrodiae_C368-T01_good_115.800
SRR6049661Rhizomagastrodiae_C368-T04_good_117.560
SRR6049662Rhizomagastrodiae_C368-T01_good_116.800
SRR6049663Rhizomagastrodiae_C368-T01_good_117.880
SRR6049664Rhizomagastrodiae_C368-T10_good_118.920
SRR6049665Rhizomagastrodiae_C368-T10_good_118.920
SRP279888GastroGastrodia elata tuber 15.00
JuvenJuvenile tuber16.28
Mother_GastroMother tuber of Gastrodia elata 23.59
Mother_JuvenMother tuber of Juvenile 16.55