Gene detail

Detail information of GWHGAAEX005782/evm.TU.scaffold_17.165

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392398606\|ref\|YP_006435207.1\|	1.00E-30	multidrug ABC transporter ATPase [Flexibacter litoralis DSM 6794]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|743802684\|ref\|XP_010926683.1\|	0	PREDICTED: pleiotropic drug resistance protein 2-like [Elaeis guineensis]
Swissprot	tr\|Q7PC84\|AB39G_ARATH	0	ABC transporter G family member 39
trEMBL	tr\|A0A059DFH7\|A0A059DFH7_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW89229.1}
TAIR	AT2G36380	0	pleiotropic drug resistance 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	6239293	6272901	+

Transcript Sequence
>GWHTAAEX005782 TGCATATCTAATCCTTGAACGGTCATACAATTATAAATTAAAATCTATACACGACTAATATAGAACAGGTTTATAAAAGGTCATCAACCCTTCCGGCTTTCGAACAGCACGTACACTGAAGCGGTCAGTTTTACGATGACTTCAATTCTGAGTGCTGATGCGGATTCCCTCAGCGGAAGCGCCATCGGGCTCTCAGGCAGCTTCAGAGAGCGGGAGGATGATTTTAGGCTGAAATCCTCGGCGAGCGATGAAGATGAGGGGAGTATCAAGAGGGCTGCTCTTGAGAAGCTCCCCCAAAACGTCGAGGAGGGCAATGAGCGGCTCTCGAAGCGCTTCAGAGATCGGTTTGACAAATTTGGAGTAGAACTTCCGAAGATCGAAGTTAGGTTTGAGGGTTTGTCTGTGGAGGCAGATTCGTATGCTGGTAGCAGAGCCCTTCCTACGCTTCTGAATACTGTCACTGATATTTTTGAGGGAGTATTTAACTTTATTAATATATATTCTCAACATAAGAAAAGGGTGAACAAGAAGATACTCAATGGGGTCAGCGGAATATTGAAGCCATCAAGGATGACCCTGCTTCTTGGACCTCCGGCCTCTGGGAAGACTACACTTCTGCTCGCTCTTGCTGGAAAGATTGGTAAAGAGCTAAGGGTTTCTGGAAAGGTTACATACTGCGGCTATGAGTTATCAGAATTTTTCCCCCAAAGAACGAGTGCCTACATTAGTCAGCATGATTCTCATATCGCTGAGATGACAGTTAGAGAGACCTTTGATTTCTCAGGGCGCTGTTTGGGCGTGGGAGAGACATATGGATTGATCTCAGAAGTGTTGAGGAGAGAGAGAGATGCGGGCATGAATCCGGACCCTGAAATTGATGCCTTCATGAAAACTGTATCAGTGGAAGGGCATAACTCCAGCTTTTCAACTGAATACATACTCAAGATGCTTGGTTTGGATATGTGTGCTGACGTTATTGTTGGCAATGAGATGAGGAGAGGGATTTCTGGAGGAGAAAAGAAACGAGTGACTACTGGTGAGATGTTGGTTGGTCCTGCAAGGGCACTCTTTATGGACGAAATATCAACAGGTCTCGATAGCTCCACCACCTTCCGGATTGTGAAGTTCATCAAACAGATGGTGCATTTAATGGATGAAACAGTTTTGATCTCTCTGCTTCAGCCAGCACCTGAGACCTTTGAGCTTTTTGATGATGTTATTTTGATGTCTGAGGGTCTGATTGTTTATCAAGGACCTCGTGAGCTTATCCTTGAATTCTTTGATAATATGGGCTTCAAATGCCCTGTAAGGAAAGGAATTGCAGACTTCCTTCAGGAGATTACATCAAGAAAGGATCAAGAGCAGTACTGGCGTAAAGAAGGCCAGCCTTACCGTTATATCACCGCCTCTGAATTTTCCTATTCTTTTGAGTCCTTTCATATTGGAAAACATGTAGAAGAAGAGCTTCGAATTCCTTTTAATAAATCCCATAACCATCCTGCCACTTTGGCAACAAAGAGGTATGGCATGCCCAGATGGGAGCTCTGCAAGGCATGCCTTTCAAAGGAGTGGCTATTGATGAAGCGCAATGCATTTGTCTTTGTGTTCAAGACTGTTCAGATAACAATTATGGCCGTGATAGCAACAACTTTTTTTCTGAAAACCCAAATGCCGCATGAAAGCATTGGTGATGGGGGCAAATACTTGGGTGCGCTATTTTTCTGTCTGATAAACATAATGTTCAATGGGGTGGCAGAAATGTATATGACCTTGATAAAACTTCCTGTTTTCTACAAACAAAGGGATAGCTTGTTTTATCCTCCTTGGGCATTTGGATTATCTTACATAATACTTAAGATTCCTCTCTCATTGCTAGAATCTGCAATTTGGATAGTTATTACTTACCCTGGAATTGGATTTGCACCTACAGCTAGCAGGTTTTTTCGACAATTTTTGGCATACTGTGTTATACACCAGATGTCTTTTGGTCTCTTCCGCTTCATTGCTGCCGTTGGAAGAACACATGTGATAACTAACGTCTGCGGAATCTTTGCATTGCTTGTTTTCTTTGTTTTAGGAGGATTTGTGGTTTCCAAAGATGATATTCAGTCATGGTGGATATGGTGCTATTGGATCTCTCCAATGATGTATGGACAGAATGCCATTGCTGTAAATGAGTTTCTTGATTCGAGATGGAGCAAGCCAAACAATGACAGCAGCATAGATCAACCAACGATTGGAAAAGCATTTCTCAAGTCAAGATCCTTGTTTGTAAATGAGTATTGGTATTGGCTTTCTATTGGTATCATTGCTGGATTTGGTCTTCTATATAACATTTTCTTTATACTTGCATTGACTTATCTGAATCCTATCGGTAATTCTCGAACTATCATCCTAAAGGATAATGAAGATGCTGGAAATAAGAACTATACTAAGAAGATTAAAGTGTCAAGGTTGGAAATATCGCCAAATGCTTCAGATAAGCCTATTGATTCAGATACTGAAACGTCAATAACATCAAGGAATTATGGGAGTGGCAGAAGCACGAACCAAAAAGTCAGGCAAGGAATGGTTTTACCTTTTCAACCATTGTCTCTTATATTTGATCAAGTAAACTATTTCGTTGACATGCCTGTGGAAATGAAAGATATGGGAGTTGAGGGAAAACGACTTCAGTTGCTTTGTAATGTGAGTGGTGCATTCAGACCTGGAGTACTGACAGCTCTAGTAGGTGTAAGTGGAGCCGGAAAGACAACACTGATGGATGTATTAGCAGGGAGGAAAACTGATGGCTATATTGAAGGAAGTATAACTGTTTCAGGGTACCCCAAAAAGCAAGAAACGTTTACTCGGGTTAGCGGTTACTGTGAACAGAATGACATTCACTCACCCTGCATCAGTGTTCATGAATCCCTTGTATTCTCAGCTTGGCTTCGCCTCTCCCCAGAAATAGACGAAAAAATCAGAAAGATGTTTGTTGAAGAAATCATGGAGTTGGTTGAGCTTAATCCTCTGAGGGATGCTCTGGTTGGCCTACCCGGTGTAGATGGTCTATCAACTGAACAAAGGAAAAGGCTAACTATTGCAGTAGAACTAGTTGCAAATCCATCCATCATTTTCATGGATGAGCCAACATCCGGCCTTGATGCTAGAGCTGCAGCTATTGTTATGAGGACAGTGAGTAATACAGTGAAAACTGGGCGAACAGTTGTGTGCACAATTCATCAGCCAAGTATTGATATTTTTGAAGCCTTTGATGAGCTACTTCTGATGAAAAGAGGAGGACAAGTCATATATGCTGGAGAGCTTGGGCATCATTCTTCAAACCTTATAGAGTATTTTGAAAAAATCCCAGGTGTGCCAAAAATTCTCGAAGGTAAAAATCCTGCCACGTGGGTGCTGGAAATTACTACCAGTGATGCCCAGTTGAGTGCGGATTTTGCTGAAGTTTATTTCTCTTCCGCTCTTTACAAAAAAAATCAAGAGCTCATCAAGGAGTTGAGCAACCCAACTCCTGGATCTAAAGATCTAACTTTTACAACAAAGTATGGGCAGAATTTCATAAACCAATTCACCGCCTGCTTCTGGAAACAATACTGGTCTTATTGGAGAAACCCGCAATATAATGTTAGCCGCTTTTTATTTACAGTCGCTGCAGGTCTTCTGTTTGGTACAATATATTGGAGAAAGGGCAACGATATAGTGACACAACAGAAACTGCTAAATTTGATGGGCGCAATGTTTACTGCTATTTTTTTTGTTGGAACTTCCAATGCGAATTCTGTGCAACCAGTGATGGCAATTGAGAGGACAGTGTTTTATCGTGAGAGGGCAGCTGGCATGTTCTCGCCCATGGCATATGCATTTGCTAAGGTGAGCATAGAAGTCATATACATTGTGGTACAGAGCCTTGCCTTTTCTCTTCTTCTCTTCTCCATGATTGATTTTGGATGGAAAAAAGACAAGTTCTTTTGGTTTTTTCTCTTCTTTCTCATGTTCTTATTGTACTTTACATTATTTGGTCTGATGGCTATATCAATAACTCCAAACTTCGAAATCTCTGGTATTTTCGCGATCTTCTTCTTCCTCCTTTGGAACTTATTCGCGGGATTCATTCTATCAAGAAAGTTGATGCCAAAATGGTGGAGATGGATAATTTGGGCAAATCCAGTGGCATGGACATTATATGGCTTAACTGTTTCTCAATTTGGGGACTTGGAAAATGTGATAGAAATTCCTGGAGAGGCAAATATGGATATTAAGGCCTTCTTGAAGCAGAGGTTGGGATTTGAGCACGACTTCCTTGGCTATGTGGTCTTGGCGCACGTTGGCTTTGTACTCATCTTCACTTTTGTGTTTGCCTATTCTCTTAGAATTTTAAACTTTCAAAAGAAATAG

Network for GWHGAAEX005782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	42	106	5.70E-10
PF00005.26	ABC_tran	134	316	1.70E-12
PF01061.23	ABC2_membrane	470	682	1.80E-42
PF08370.10	PDR_assoc	687	753	2.70E-24
PF00005.26	ABC_tran	850	1001	4.00E-19
PF01061.23	ABC2_membrane	1145	1358	3.30E-52

Protein Sequence

>GWHPAAEX005782
MTSILSADADSLSGSAIGLSGSFREREDDFRLKSSASDEDEGSIKRAALEKLPQNVEEGNERLSKRFRDRFDKFGVELPKIEVRFEGLSVEADSYAGSRALPTLLNTVTDIFEGVFNFINIYSQHKKRVNKKILNGVSGILKPSRMTLLLGPPASGKTTLLLALAGKIGKELRVSGKVTYCGYELSEFFPQRTSAYISQHDSHIAEMTVRETFDFSGRCLGVGETYGLISEVLRRERDAGMNPDPEIDAFMKTVSVEGHNSSFSTEYILKMLGLDMCADVIVGNEMRRGISGGEKKRVTTGEMLVGPARALFMDEISTGLDSSTTFRIVKFIKQMVHLMDETVLISLLQPAPETFELFDDVILMSEGLIVYQGPRELILEFFDNMGFKCPVRKGIADFLQEITSRKDQEQYWRKEGQPYRYITASEFSYSFESFHIGKHVEEELRIPFNKSHNHPATLATKRYGMPRWELCKACLSKEWLLMKRNAFVFVFKTVQITIMAVIATTFFLKTQMPHESIGDGGKYLGALFFCLINIMFNGVAEMYMTLIKLPVFYKQRDSLFYPPWAFGLSYIILKIPLSLLESAIWIVITYPGIGFAPTASRFFRQFLAYCVIHQMSFGLFRFIAAVGRTHVITNVCGIFALLVFFVLGGFVVSKDDIQSWWIWCYWISPMMYGQNAIAVNEFLDSRWSKPNNDSSIDQPTIGKAFLKSRSLFVNEYWYWLSIGIIAGFGLLYNIFFILALTYLNPIGNSRTIILKDNEDAGNKNYTKKIKVSRLEISPNASDKPIDSDTETSITSRNYGSGRSTNQKVRQGMVLPFQPLSLIFDQVNYFVDMPVEMKDMGVEGKRLQLLCNVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTDGYIEGSITVSGYPKKQETFTRVSGYCEQNDIHSPCISVHESLVFSAWLRLSPEIDEKIRKMFVEEIMELVELNPLRDALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVSNTVKTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGELGHHSSNLIEYFEKIPGVPKILEGKNPATWVLEITTSDAQLSADFAEVYFSSALYKKNQELIKELSNPTPGSKDLTFTTKYGQNFINQFTACFWKQYWSYWRNPQYNVSRFLFTVAAGLLFGTIYWRKGNDIVTQQKLLNLMGAMFTAIFFVGTSNANSVQPVMAIERTVFYRERAAGMFSPMAYAFAKVSIEVIYIVVQSLAFSLLLFSMIDFGWKKDKFFWFFLFFLMFLLYFTLFGLMAISITPNFEISGIFAIFFFLLWNLFAGFILSRKLMPKWWRWIIWANPVAWTLYGLTVSQFGDLENVIEIPGEANMDIKAFLKQRLGFEHDFLGYVVLAHVGFVLIFTFVFAYSLRILNFQKK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.960
SRP064423	SRR2545915	Juvenile tuber	9.480
SRP108465	SRR5643513	five period of Gastrodia elata	18.530
	SRR5643514	five period of Gastrodia elata	19.550
	SRR5643515	five period of Gastrodia elata	12.120
	SRR5643524	five period of Gastrodia elata	17.440
	SRR5643525	five period of Gastrodia elata	11.620
	SRR5643528	five period of Gastrodia elata	8.800
	SRR5643658	five period of Gastrodia elata	12.940
	SRR5643659	five period of Gastrodia elata	7.810
	SRR5643660	five period of Gastrodia elata	6.230
	SRR5643661	five period of Gastrodia elata	5.390
	SRR5643662	five period of Gastrodia elata	3.720
	SRR5643663	five period of Gastrodia elata	5.890
	SRR5643664	five period of Gastrodia elata	4.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.320
SRP279888	Gastro	Gastrodia elata tuber	5.90
	Juven	Juvenile tuber	32.30
	Mother_Gastro	Mother tuber of Gastrodia elata	20.88
	Mother_Juven	Mother tuber of Juvenile	27.93