Detail information of GWHGAAEX005785/evm.TU.scaffold_17.174_evm.TU.scaffold_17.175
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159042588|ref|YP_001531382.1| | 7.00E-80 | three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein [Dinoroseobacter shibae DFL 12 = DSM 16493] |
| nr | gi|743885271|ref|XP_010909882.1| | 0 | PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8VZA5|KDTA_ARATH | 4.00E-175 | Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (Precursor) |
| trEMBL | tr|M5VSQ8|M5VSQ8_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ04402.1} |
| TAIR | AT5G03770 | 3.00E-163 | KDO transferase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 6462006 | 6539827 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005785
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04413.15 | Glycos_transf_N | 41 | 220 | 1.00E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT30 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02527 | kdtA, waaA | Metabolic pathways | map01100 |
| Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.570 |
| SRR2545915 | Juvenile tuber | 5.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.030 |
| SRR5643514 | five period of Gastrodia elata | 7.240 | |
| SRR5643515 | five period of Gastrodia elata | 5.580 | |
| SRR5643524 | five period of Gastrodia elata | 6.120 | |
| SRR5643525 | five period of Gastrodia elata | 6.780 | |
| SRR5643528 | five period of Gastrodia elata | 6.450 | |
| SRR5643658 | five period of Gastrodia elata | 7.010 | |
| SRR5643659 | five period of Gastrodia elata | 4.050 | |
| SRR5643660 | five period of Gastrodia elata | 4.680 | |
| SRR5643661 | five period of Gastrodia elata | 3.930 | |
| SRR5643662 | five period of Gastrodia elata | 4.410 | |
| SRR5643663 | five period of Gastrodia elata | 3.730 | |
| SRR5643664 | five period of Gastrodia elata | 4.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.61 |
| Juven | Juvenile tuber | 8.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.33 | |
| Mother_Juven | Mother tuber of Juvenile | 8.98 |