Detail information of GWHGAAEX005788/evm.TU.scaffold_17.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1571 | 8.00E-105 | Predicted E3 ubiquitin ligase |
| nr | gi|672158256|ref|XP_008798861.1| | 0 | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FPH0|XB34_ARATH | 6.00E-08 | Putative E3 ubiquitin-protein ligase XBAT34 |
| trEMBL | tr|D7TPA0|D7TPA0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI32323.3} |
| TAIR | AT1G59560 | 8.00E-105 | E3 Ubiquitin ligase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 6662368 | 6679363 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005788
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12483.7 | GIDE | 118 | 267 | 1.90E-34 |
| PF13920.5 | zf-C3HC4_3 | 323 | 365 | 1.20E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0006996 | Biological Process | organelle organization |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.400 |
| SRR2545915 | Juvenile tuber | 46.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.870 |
| SRR5643514 | five period of Gastrodia elata | 39.400 | |
| SRR5643515 | five period of Gastrodia elata | 39.220 | |
| SRR5643524 | five period of Gastrodia elata | 41.910 | |
| SRR5643525 | five period of Gastrodia elata | 74.120 | |
| SRR5643528 | five period of Gastrodia elata | 72.210 | |
| SRR5643658 | five period of Gastrodia elata | 95.870 | |
| SRR5643659 | five period of Gastrodia elata | 37.710 | |
| SRR5643660 | five period of Gastrodia elata | 33.750 | |
| SRR5643661 | five period of Gastrodia elata | 35.690 | |
| SRR5643662 | five period of Gastrodia elata | 37.200 | |
| SRR5643663 | five period of Gastrodia elata | 38.030 | |
| SRR5643664 | five period of Gastrodia elata | 35.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.51 |
| Juven | Juvenile tuber | 41.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.46 | |
| Mother_Juven | Mother tuber of Juvenile | 40.30 |