Detail information of GWHGAAEX005789/evm.TU.scaffold_17.180


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29531.00E-87mRNA-binding protein Encore
nrgi|743884510|ref|XP_010909706.1|6.96E-130PREDICTED: uncharacterized protein LOC105035733 [Elaeis guineensis]
trEMBLtr|M0U7E2|M0U7E2_MUSAM1.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP08310_001}
TAIRAT3G566801.00E-87Single-stranded nucleic acid binding R3H protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001867418776761471-
Transcript Sequence

Network for GWHGAAEX005789

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01424.21R3H381011.10E-11
PF12752.6SUZ1291745.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms407.030
SRR2545915Juvenile tuber365.100
SRP108465SRR5643513five period of Gastrodia elata236.440
SRR5643514five period of Gastrodia elata167.910
SRR5643515five period of Gastrodia elata217.780
SRR5643524five period of Gastrodia elata170.110
SRR5643525five period of Gastrodia elata298.980
SRR5643528five period of Gastrodia elata233.800
SRR5643658five period of Gastrodia elata270.460
SRR5643659five period of Gastrodia elata306.950
SRR5643660five period of Gastrodia elata332.100
SRR5643661five period of Gastrodia elata340.960
SRR5643662five period of Gastrodia elata323.710
SRR5643663five period of Gastrodia elata336.840
SRR5643664five period of Gastrodia elata342.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1265.000
SRR6049655Rhizomagastrodiae_C368-T10_good_1219.050
SRR6049656Rhizomagastrodiae_C368-T07_good_1221.100
SRR6049657Rhizomagastrodiae_C368-T07_good_1330.760
SRR6049658Rhizomagastrodiae_C368-T04_good_1285.410
SRR6049659Rhizomagastrodiae_C368-T04_good_1358.950
SRR6049660Rhizomagastrodiae_C368-T01_good_1287.700
SRR6049661Rhizomagastrodiae_C368-T04_good_1262.360
SRR6049662Rhizomagastrodiae_C368-T01_good_1156.710
SRR6049663Rhizomagastrodiae_C368-T01_good_1207.860
SRR6049664Rhizomagastrodiae_C368-T10_good_1188.830
SRR6049665Rhizomagastrodiae_C368-T10_good_1188.830
SRP279888GastroGastrodia elata tuber 367.14
JuvenJuvenile tuber413.86
Mother_GastroMother tuber of Gastrodia elata 220.04
Mother_JuvenMother tuber of Juvenile 298.61