Gene detail

Detail information of GWHGAAEX005795/evm.TU.scaffold_17.187

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392411628\|ref\|YP_006448235.1\|	2.00E-10	hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799]
KOG	KOG0379	1.00E-104	Kelch repeat-containing proteins
nr	gi\|743877021\|ref\|XP_010907741.1\|	0	PREDICTED: rab9 effector protein with kelch motifs isoform X4 [Elaeis guineensis]
Swissprot	tr\|Q8RWD9\|ACBP5_ARATH	3.00E-26	Acyl-CoA-binding domain-containing protein 5
trEMBL	tr\|M0TNG7\|M0TNG7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P07640_001}
TAIR	AT2G36360	1.00E-104	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	7146222	7224290	+

Transcript Sequence
>GWHTAAEX005795 CCATCACTTGCCTCAGTTCGAGGCGTTGTGTTTGGCAGCTGAGGCCTCTAAGAACTGTAGTTGATTTACAAATTAGAAGGCCCGCGAGGGAGAAGACTACAGGAAAGGGAAGAAAATATGAACTGGGTTAGAGCCGACGCCTCAGATTTTGGCGGAAATCTCCCAATTGCTCGAAGCGGCCACACAGCGGTGACTGTCGGGAAATCGAATGTTGTTGTATTTGGAGGCTTCGCCGATCGAAGATTTCTCGTCGACATCTCCGTCTATGACGTTGACAATGGTATATGGTTTACTCCTGACTGCACAGGAAGTGGGTCTGATGGACAGGTCAGCCCAGCACCACGTGCATTTCATGTTGCAGTTTCCATTGATTGCCACATGTTTGTGTTTGGTGGGCGTTCGGGAAGCAAAAGGCTGGGTGATTTTTGGATGCTTGATACTGATATTTGGCAGTGGTTAGAGTTGACAAGCTTTGGTGACTTGCCATCAGCAAGGGAGTTTGCTTCTGCTTCAGCTATTGGAAATAGAAAAATTGTTATGTATGGTGGCTGGGATGGTAAAAAATGGTTATCAGACGTTTATATCTTAGACACAATAACTCTCGAGTGGGCAGAGCTTTCAATTATGGGTTCCGCACCACCACCAAGATGTGGGCATACAGCCACCATGGTTGAAAAGCGATTGCTAGTCTTTGGTGGTAGGGGAGGTGGTGGTCCTATAATGGGAGATTTATGGGCTTTGAAGGGTCTTATTGAGGAAGAGAATGAGATGCCAGGCTGGACTCAGTTAAAGCTTCCTGGACAGCCGCCATCTCCTCGCTGTGGCCACACAATAACTTCTGGTGGACACTATCTCTTAGTGTTTGGTGGTCATGGCACAGGAGGTTGGCTAAGCCGTTATGATATCTATTACAATGAATGTATTGTCCTTGATAGAATATCCGTTCAGTGGAAACGTCTGCCTACCAACAATGAACCTCCTCTCCCGAGAGCTTATCATTCTATGACTTGCATTGGTGCACGTTATCTTTTATTTGGTGGCTTTGATGGGAAAACTACTTTTGGTGATATATGGTGGCTGGTCCCAGAAGGCATCTTCAGCACTTTTGCTGGTGTAGTTGTGAATGCAATCAACTTCTACCATGATTTTACTTCTGATGACCCTATTGCCAAGCGGCCTCTCCCATGTTCTTCGGATGTTTCTTCTGAAAGCAGCCCTGTAATTTCCAATCAATCAGAACAATCTACGCTACAGGAAAACCAACAAGACCAATTAGCAATTTTAGAGTTGGAAAAAAAGTTGGGAGTTTCGGTTCGCTCTTCGGAAGCTCATGTAAATGTTGTTGATGAAGTTCATGACAAAGAACTTCTGATGTTATCTGCCAAGTTAGCTGTAGAAGTGCTTCCAACCAGTGAAAAAGCTGTGTCCATTCAGGCATTACGAGAACACTGGAAGAGTTGTGCTCCTAGTTCAATACAACTATGTGAGCTAGGTGTCCTGCTTCGAGACTACCAACGTTTTATAATCAATCGACACAGAGAAACGTTAATGCACAACTCATTTGCAGATGTGTCCCACCAGGAACTAGAGGTTTACCATTTTTTTCACTTGAAGAATGCTTCCCAGCTGCGCTTGAGCGACATTCCAAAGCTTCTTGACGAATATAAACAGCTTCTCTCACATTGAAGTATTCCTGCAAATGTACTAATCCTTAACTATAATTTATGATGTATTTCACTTATATATATAAGAATGCATGTATGTGATGAGTCATTTCCTTCTTTGAAAGAGTATGAGCTTCAATAAAAAAGCAAATGTAATCGGTGGAACAATGATATGACATGATAATTCCAAAGTTTCATGTATTACATTTATAATGGTGGTTACTTTCATAAAATTTTAATATATCAATTAATAGCTTA

Network for GWHGAAEX005795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13415.5	Kelch_3	87	134	4.00E-09
PF13415.5	Kelch_3	137	183	1.00E-07
PF13415.5	Kelch_3	187	240	4.60E-06
PF13415.5	Kelch_3	243	297	1.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.090
SRP064423	SRR2545915	Juvenile tuber	15.220
SRP108465	SRR5643513	five period of Gastrodia elata	11.210
	SRR5643514	five period of Gastrodia elata	11.250
	SRR5643515	five period of Gastrodia elata	8.530
	SRR5643524	five period of Gastrodia elata	10.300
	SRR5643525	five period of Gastrodia elata	10.760
	SRR5643528	five period of Gastrodia elata	11.180
	SRR5643658	five period of Gastrodia elata	12.450
	SRR5643659	five period of Gastrodia elata	9.650
	SRR5643660	five period of Gastrodia elata	10.930
	SRR5643661	five period of Gastrodia elata	9.270
	SRR5643662	five period of Gastrodia elata	8.310
	SRR5643663	five period of Gastrodia elata	8.760
	SRR5643664	five period of Gastrodia elata	9.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.540
SRP279888	Gastro	Gastrodia elata tuber	15.46
	Juven	Juvenile tuber	17.59
	Mother_Gastro	Mother tuber of Gastrodia elata	12.99
	Mother_Juven	Mother tuber of Juvenile	15.96