Gene detail

Detail information of GWHGAAEX005797/evm.TU.scaffold_17.191

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1918	1.00E-138	3-methyladenine DNA glycosidase
nr	gi\|743931983\|ref\|XP_011010277.1\|	0	PREDICTED: uncharacterized protein LOC105115164 isoform X1 [Populus euphratica]
trEMBL	tr\|A0A067LE17\|A0A067LE17_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42720.1}
TAIR	AT1G19480	1.00E-138	DNA glycosylase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	7331028	7386263	-

Transcript Sequence
>GWHTAAEX005797 ATGGGTGACATGGAAGCAGATGAAGCCAGGGAAGAAGGATCAGATACTGTTTTCAAGGGGACTTCATCTTTCCAAATAATAAATGGTGTGCCTATCTTAACTTTCGATCCCTCTGTAGAGAACTTCTTCTCTAGCATGGAATATATTTCAAAGCTCTGCGGTGGAACTAAAGAAGCAAATTTTGATGCAAGCGAGATTGAAAATTTCAAGTCTATGATTGTTTTCTTAAGAGAATGGAAACAATTCTATTTTTGTGAATGGACGCCATTCCATTATAAGCCCAAAACAGTCAATTTTACTCTTCAGACTGGGTCTGCTGAAACTATATCTGCTGTTAACGGGATAAAGCTTCCTCCCCTTTCATCAGCAGCTGTTCCAAAGTTGGAGAAGGTACATAGCACAGCATCAGCATTTGTCAATGATAATTTTATTTTGCATGTTGGAGGATCTATTTGGGCCTTGGATTGGTGTCCTAGATTTCATGAAAACATTAGTAACGGCATCAAGTGTGAGTATCTTGCAATTGCTGCCCACCCTTATGGTTCCGAGCATCACAAGATTGGCCAAAGGTTGAGTGGAAGAGGCTGTATTCAAATATGGTGTTTCCTGCATTCGAGTGATGAGGAATTCCTTTGTCCTGAAGGTGTCAGTTACAGTGCGGATTCTTGTGCTCCAAAGCTTAGAGGACGGCCCAGGAAGATGGCCACTTCAACTTCAAATGAGCTTAATGGAGCTAGCAATAACATGCTTATTAATCCTTCATCTGAACCATCATCTTTAAGAGGCCTTGCAGTCTCAAACAAGTGTGGCGTGTCAAGTGACTTTAACATGAATGAAGAGCTTAGGAATTTGTATGGATCAAGTGATTGGAATATCAATAATGCTGCTCTTAAAAGCGGTGATAATCCCATTGAAGTACCAAAAAAGTGTAGAGGGAGACCTAAAAAAATCATTGGTGCAAATGCACTGAGACGCAGAGGAAGACCAAGGAAACATCCATTGGTTTCCCTTTCCCCTAGAAAAATTGCTGGTGCAAAGGCAGTGAGACCCAGAGGAAGACCAAGGAAACATTTATTGGTTTCCCTTCTCTCACCTGGTTCAAATGGAAATGCTATTTCATTTTCTTCAGGGCACAGAAAGATACCTGAGACTTATTCTGTTCCAGAGAAGGCTATTGAGATAAGTACCCTGGGGAATTTCAATTATAAAGTAGACGCTATAAATCGTTGTTCAATGGATAGGAAGAGGGAGGTCAAAGATTTGGCCATCATTAGTTGTGATGATAATGATAAATCTGTGAAAGCAAAAGGTTTATCACTTATCAGAGAAGATCATGATTATGAAATAGGTGCTCTTCCCAGTGGTGTTGATGGTTGTAAGGAAGTTGTTATAAGGACTGATGTGTCAGTTCAAGATAAATTTTGTATTCCTGATGGGATTGCTCTACCAAGGTTAATGCTATCTCTGGCTCACAATGGAAAAGTTACTTGGGATATGAAGTGGAGACCTTTGGATGCAGTTGATTCTAACGGCAAACATCATGTAGGCTACCTCGCTGTTTTGTTGGGCAATGGTTCCTTGGAAGTGTGGGAAGTTCCAGAACATAGGCTGGTCAAGCACTTGTATACTAGTTGTCACTGTGAGGGTACTGATCCCCGCTTTTTGAAATTGCTTCCTGTATTCAAATGTTCAAATTTAATGTTTGGAGAAAGGCAAAGCATTCCTCTTACATTGGAGTGGTCTCCTTCTGCCTCTCGTAATTTAATTATAGCTGGATGCCATGATGGAACGGTTGCCCTGTGGAAGTTCTCTCCACACTATTCATCTCCAGAAACGAGACCCTTGCTATGCTTTACTGCAGACACGGTCCCCATACGATGTCTTGCATGGGCTCCAGATGACAGTGATGCTGAATGCTCAAATTTGATTGTGATTGCTGGACATGAAGGCTTAAAATTTTGGAACCTACGCAGCCCATATCGCCCTCTTTTGGAACTTTGTCCCGTGCAAAGAGCTGTGCTTGGTCTTGATTGGTTGCAAGATCCCAGATGCCTTGTCATCGCATATGAAGATGGTTTCATTAGAACACTGAGCTTGGCAAATATAGCAAATGATTTACTTGTTTCTGGGGATTCTTTATCTAGAACAAAACAGCCAGGAATGCACTCTCAGTTTGGTTCAATTTTTACCATTTGGAGTGTCCATGTATCGCGCAGCACTGGTCTTGCTGCCTACTGTAGCTCAGATGGCTGCACCTGCTACTTTCAGCTCACTGCGAATTCTGTTGGCAAGTATTCAAGCCGCCATCGTAAGCCGCACTTTCTCTGTGGCTCTCTTATAGAGGAAGATTCCAGTCTTACCATCAACACTTTCTTGACAAGTATTCCTTTACCCAAACAGCCATTTGCTTCAAAGGCTGTGGCCAATGAAGCAGCAAGACCATCCAGTTCATCAGCACAAGATTTATGTTGGTATGACGATCAAACGATAATGAACAACAACGACAATGACGCCGACGCTCAGAGGGCAAGAAAAGATAACCCAAGAAAAAAAGCAAAAGTTGGAGAATACGGAGATGCCCCACCGGAAAATAATGCTATGAAATTTCCTCCCAAGACTGTGGCTATGCACAAGGTGAGATGGAACATGAACAGAGGCAGTGGAAGATGGCTGTGCTATGGAGGTGCCGCCGGCATTGTGCGATGCCAGGCTATATACGCTCCAAATAGGATGGACAATGAGGGCTTAAAGGTTCTTCGTGGGTAG

Network for GWHGAAEX005797

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.930
SRP064423	SRR2545915	Juvenile tuber	7.060
SRP108465	SRR5643513	five period of Gastrodia elata	5.230
	SRR5643514	five period of Gastrodia elata	6.070
	SRR5643515	five period of Gastrodia elata	5.670
	SRR5643524	five period of Gastrodia elata	5.330
	SRR5643525	five period of Gastrodia elata	3.250
	SRR5643528	five period of Gastrodia elata	7.710
	SRR5643658	five period of Gastrodia elata	5.780
	SRR5643659	five period of Gastrodia elata	8.870
	SRR5643660	five period of Gastrodia elata	7.940
	SRR5643661	five period of Gastrodia elata	14.820
	SRR5643662	five period of Gastrodia elata	9.110
	SRR5643663	five period of Gastrodia elata	7.830
	SRR5643664	five period of Gastrodia elata	10.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.050
SRP279888	Gastro	Gastrodia elata tuber	11.43
	Juven	Juvenile tuber	6.36
	Mother_Gastro	Mother tuber of Gastrodia elata	9.64
	Mother_Juven	Mother tuber of Juvenile	5.64