Detail information of GWHGAAEX005799/evm.TU.scaffold_17.193
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428208282|ref|YP_007092635.1| | 5.00E-21 | WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203] |
| KOG | KOG0973 | 0 | Histone transcription regulator HIRA, WD repeat superfamily |
| nr | gi|743863082|ref|XP_010943709.1| | 0 | PREDICTED: protein HIRA isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q652L2|HIRA_ORYSJ | 0 | Protein HIRA |
| trEMBL | tr|M0TEC2|M0TEC2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P03320_001} |
| TAIR | AT3G44530 | 0 | homolog of histone chaperone HIRA |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 7431690 | 7441585 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005799
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 58 | 92 | 0.00027 |
| PF00400.31 | WD40 | 118 | 152 | 5.50E-07 |
| PF00400.31 | WD40 | 158 | 193 | 1.40E-05 |
| PF07569.10 | Hira | 701 | 900 | 5.80E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.380 |
| SRR2545915 | Juvenile tuber | 13.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.650 |
| SRR5643514 | five period of Gastrodia elata | 18.770 | |
| SRR5643515 | five period of Gastrodia elata | 18.290 | |
| SRR5643524 | five period of Gastrodia elata | 19.160 | |
| SRR5643525 | five period of Gastrodia elata | 12.620 | |
| SRR5643528 | five period of Gastrodia elata | 11.680 | |
| SRR5643658 | five period of Gastrodia elata | 10.720 | |
| SRR5643659 | five period of Gastrodia elata | 17.620 | |
| SRR5643660 | five period of Gastrodia elata | 18.750 | |
| SRR5643661 | five period of Gastrodia elata | 17.920 | |
| SRR5643662 | five period of Gastrodia elata | 18.540 | |
| SRR5643663 | five period of Gastrodia elata | 17.300 | |
| SRR5643664 | five period of Gastrodia elata | 13.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.12 |
| Juven | Juvenile tuber | 17.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.44 | |
| Mother_Juven | Mother tuber of Juvenile | 21.48 |