Detail information of GWHGAAEX005803/evm.TU.scaffold_17.200


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21641.00E-36Predicted E3 ubiquitin ligase
nrgi|695045741|ref|XP_009410671.1|1.20E-103PREDICTED: E3 ubiquitin-protein ligase RNF170-like isoform X1 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0TK06|M0TK06_MUSAM4.00E-104Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23200_001}
TAIRHS213619541.00E-36Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001878933107905125+
Transcript Sequence

Network for GWHGAAEX005803

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_37572.30E-06
PF06803.11DUF12321291659.90E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.560
SRR2545915Juvenile tuber11.340
SRP108465SRR5643513five period of Gastrodia elata17.090
SRR5643514five period of Gastrodia elata19.900
SRR5643515five period of Gastrodia elata18.670
SRR5643524five period of Gastrodia elata19.920
SRR5643525five period of Gastrodia elata38.370
SRR5643528five period of Gastrodia elata31.760
SRR5643658five period of Gastrodia elata42.550
SRR5643659five period of Gastrodia elata15.090
SRR5643660five period of Gastrodia elata12.920
SRR5643661five period of Gastrodia elata17.190
SRR5643662five period of Gastrodia elata15.260
SRR5643663five period of Gastrodia elata15.470
SRR5643664five period of Gastrodia elata15.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.500
SRR6049655Rhizomagastrodiae_C368-T10_good_118.760
SRR6049656Rhizomagastrodiae_C368-T07_good_120.000
SRR6049657Rhizomagastrodiae_C368-T07_good_114.350
SRR6049658Rhizomagastrodiae_C368-T04_good_115.100
SRR6049659Rhizomagastrodiae_C368-T04_good_118.280
SRR6049660Rhizomagastrodiae_C368-T01_good_111.170
SRR6049661Rhizomagastrodiae_C368-T04_good_116.380
SRR6049662Rhizomagastrodiae_C368-T01_good_119.870
SRR6049663Rhizomagastrodiae_C368-T01_good_118.850
SRR6049664Rhizomagastrodiae_C368-T10_good_122.830
SRR6049665Rhizomagastrodiae_C368-T10_good_122.830
SRP279888GastroGastrodia elata tuber 18.54
JuvenJuvenile tuber15.84
Mother_GastroMother tuber of Gastrodia elata 33.81
Mother_JuvenMother tuber of Juvenile 29.31