Detail information of GWHGAAEX005804/evm.TU.scaffold_17.201
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-163 | FOG: PPR repeat |
| nr | gi|672167176|ref|XP_008803539.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Phoenix dactylifera] |
| Swissprot | tr|P0C8Q7|PP369_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g08305 |
| trEMBL | tr|K7N2R3|K7N2R3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G23811.1} |
| TAIR | AT5G08310 | 9.00E-163 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 7905755 | 7907461 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005804
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 70 | 119 | 5.70E-09 |
| PF01535.19 | PPR | 144 | 168 | 0.15 |
| PF13041.5 | PPR_2 | 203 | 250 | 1.30E-08 |
| PF01535.19 | PPR | 278 | 298 | 0.055 |
| PF13041.5 | PPR_2 | 306 | 353 | 5.20E-10 |
| PF01535.19 | PPR | 380 | 404 | 0.068 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.280 |
| SRR2545915 | Juvenile tuber | 0.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.360 |
| SRR5643514 | five period of Gastrodia elata | 2.110 | |
| SRR5643515 | five period of Gastrodia elata | 1.930 | |
| SRR5643524 | five period of Gastrodia elata | 2.040 | |
| SRR5643525 | five period of Gastrodia elata | 0.680 | |
| SRR5643528 | five period of Gastrodia elata | 0.710 | |
| SRR5643658 | five period of Gastrodia elata | 0.750 | |
| SRR5643659 | five period of Gastrodia elata | 2.660 | |
| SRR5643660 | five period of Gastrodia elata | 2.980 | |
| SRR5643661 | five period of Gastrodia elata | 3.080 | |
| SRR5643662 | five period of Gastrodia elata | 3.150 | |
| SRR5643663 | five period of Gastrodia elata | 2.800 | |
| SRR5643664 | five period of Gastrodia elata | 3.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.28 |
| Juven | Juvenile tuber | 2.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.16 |