Gene detail

Detail information of GWHGAAEX005807/evm.TU.scaffold_17.206

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|434394159\|ref\|YP_007129106.1\|	neutral invertase [Gloeocapsa sp. PCC 7428]
nr	gi\|743763416\|ref\|XP_010911892.1\|	PREDICTED: alkaline/neutral invertase CINV2-like [Elaeis guineensis]
Swissprot	tr\|Q69T31\|CINV1_ORYSJ	Cytosolic invertase 1 {ECO:0000303\|PubMed:18317796}
trEMBL	tr\|A0A0A0K476\|A0A0A0K476_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN44485.1}
TAIR	AT4G09510	cytosolic invertase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	8027723	8063856	-

Transcript Sequence
>GWHTAAEX005807 TTTGAAAATTCAAACAATGCTGGCTAAGAAAGATCGGATCCAGCCAGCCATCGAATTTGACTGGCCGTTCGGTGCACATATCCGCGGATGCTAACCGGCTATAGCCAGTCATCTATAAATCCGACCCGCAAATCGCAGGGATAGAAAAACAAACGAAACGACTCCCTCTGCTGGCCCCTGACCCCTACCATCTTCCATGGTTTCCGCCTATAAATACTGTCGCCGTAGGCGACCCCTCTTTTTTTTCCCCTTTCTCCGTCTCCAATTAAGTGGAGGAGCCCTTCCTAGATTCCGGGAGCAGTTCAATCCTGCCGCTGGTTCCGCTCAGCCCTCTCTCTCCCTCCTTCTCTCTCTCTTTCCCCTCTATTTATATCCATGTTTTCTGGATTTGTTTCCAGCGAGAATCCAGATTTTGGCATCTGTTGCCATCACGCAATGATTGATTTAGCATGTTTTATAGAAGGGATGTGCCTGATGATTATATGGTTTCGCTGGAATGTCGATCTCTTTTGATTTTCGCAATCTAACTCCGTCATTGGATGCAGATCGGGAGAAAGGTGAGGAGAAGGAAGCGGTATGGACGGAATCGCAGGGATGCGGAAGGTGGCGTCTCACTGCTCTATGGCGGATGGAGACGATCTCGATCTAGTCAGGCTACTCGATAAGCCGAGGCTGAACATTGAGCGCCAGAGATCTTTCGACGAGAGGTCTCTCAGCGAGCTTTCAATCAATATCCGCCAGGTGGATGGTTTTGAAAACACGTACTCTCCTGGAGGAATGAGGTCTGGCTTCGATACCCCAGCTTCTTCTATGAGAAACTCCTTCGAGCCACATCCCATGGTGGCGGAAGCCTGGGAGGCCCTTCGGCGCTCTCTGGTGTACTTTCGTGGCCAGCCACTGGGAACCATTGCTGCCGTAGATCATGCTTCCGAGGAGGTTCTGAATTATGATCAGGTTTTTGTCCGTGATTTTGTACCGAGTGCATTGGCATTTTTGATGAATGGCGAGTCGGAGATTGTAAAAAATTTTCTCCTAAAAACACTTCTTCTTCAGGGGTGGGAAAAGAGGGTTGACCGATTTAAGCTTGGAGAAGGTGTTATGCCAGCAAGCTTCAAGGTGCTTCATGACCCACTTAGGAAAGTTGATACAGTCATTGCAGATTTTGGTGAGAGCGCAATCGGAAGAGTTGCACCCGTTGATTCTGGATTCTGGTGGATAATTTTGTTGCGTGCGTATACGAAGTCTACTGGTGACTTGTCTCTTGCTGAAACACCTGAATGTCAAAAGGGAATGAGACTCATATTAGCACTATGCTTGTCCGAGGGATTCGACACATTCCCGACCTTACTCTGTGCTGATGGATGCTCAATGATAGATAGAAGGATGGGAATTTATGGGTATCCTATTGAGATCCAGGCACTGTTTTTTATGGCTTTGAGGTGTGCTTTGGCAATGCTTAAACATGATGCAGAAGGAAAGGAATTCATTGAGCGGATAGTGAAGCGTCTTCATGCTCTAAGTTATCACATGAGGAACTACTTCTGGCTTGACTTCCAACAGCTAAACGTCATTTATCGCTATAAAACAGAGGAGTATTCCCACACTGCAGTCAACAAATTTAATGTAATTCCCGATTCAATTCCAGAATGGGTTTTTGATTTCATGCCCACACGCGGCGGCTACTTCATAGGAAATGTCAGCCCTGCGAGGATGGACTTCAGGTGGTTTGCTTTGGGTAATTGTGTTGCCATTCTGTCATCTCTTGCCACTCCTGAGCAGTCCATGGCTATTATGGACCTGATTGAAGCACGCTGGGATGAGTTGGTTGGAGAAATGCCTCTTAAGATCACTTATCCTGCCATTGAGGGCCATGAATGGCGCATCGTGACTGGTTGTGATCCCAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGTGCTTCTGTGGATGCTCACTGCGGCGTGCATCAAGACAGGCCGACCCCAGATTGCTCGTCGAGCAATAGAGCTCGCAGAAACCCGGCTTCTGAGGGATGGCTGGCCCGAATATTACGATGGCACTCTAGGCCGATATATTGGCAAGCAAGCCAGAAAGTTTCAGACTTGGTCTATTGCAGGCTATTTGGTGGCCAAGATGATGTTGGAGGACCCTTCGCATTTAGGCATGGTCTCTTTAGAGGAGGACAAGGCTATGAAACCTCTCATGAAGAGATCCAGCTCATGGACTTGCTGATCATTCGAGTGTGAAATTTTATAATTTTATTTTACTATTGTTATTGTTTCTTCAAATCTTTCTTATTTATATATATATTTAGCACGTAAACTTCAATATTACTGAGAAGATTTAAGTGTTACGTTGATGAAGATTGAAGTTTAGGTGTTAGATATTCAAATAAAGGAAAGATTTGGTGCATAGCACTTAAATGCTCTTTTCCCTAATGGGGGGAAAGTGGGGTTTAAAATGATAAAGTTTTGGCCTGTAAAATATGATCTCTTATATATTATAGCCCTAGCCACATTGATCTTGATGATGAAAGGCTTAGCTCTTTATGGTTTATTTATTTATTTATTTTATATTATTTTTTTGCCAAAGTTTTCTGGTATTTTATGTAACCCACGAAACAATAGACTACTTGCGAGAATTTGGCCTATATTATTTGATCGTTTATATATTATTAGCCCCTTGTTGATATTTGCTGCCCCTTTCAGCTATATAGTGTGAG

Network for GWHGAAEX005807

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12899.6	Glyco_hydro_100	92	528	7.50E-214

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0033926	Molecular Function	glycopeptide alpha-N-acetylgalactosaminidase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.570
SRP064423	SRR2545915	Juvenile tuber	59.440
SRP108465	SRR5643513	five period of Gastrodia elata	40.050
	SRR5643514	five period of Gastrodia elata	48.450
	SRR5643515	five period of Gastrodia elata	54.790
	SRR5643524	five period of Gastrodia elata	58.780
	SRR5643525	five period of Gastrodia elata	63.410
	SRR5643528	five period of Gastrodia elata	101.040
	SRR5643658	five period of Gastrodia elata	65.950
	SRR5643659	five period of Gastrodia elata	48.660
	SRR5643660	five period of Gastrodia elata	57.120
	SRR5643661	five period of Gastrodia elata	53.680
	SRR5643662	five period of Gastrodia elata	68.210
	SRR5643663	five period of Gastrodia elata	54.560
	SRR5643664	five period of Gastrodia elata	42.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.330
SRP279888	Gastro	Gastrodia elata tuber	59.62
	Juven	Juvenile tuber	51.35
	Mother_Gastro	Mother tuber of Gastrodia elata	187.99
	Mother_Juven	Mother tuber of Juvenile	184.68