Gene detail

Detail information of GWHGAAEX005810/evm.TU.scaffold_17.211

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|298675626\|ref\|YP_003727376.1\|	4.00E-58	DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
KOG	KOG0970	0	DNA polymerase alpha, catalytic subunit
nr	gi\|672124915\|ref\|XP_008785858.1\|	0	PREDICTED: DNA polymerase alpha catalytic subunit [Phoenix dactylifera]
Swissprot	tr\|O48653\|DPOLA_ORYSJ	0	DNA polymerase alpha catalytic subunit
trEMBL	tr\|B9SC90\|B9SC90_RICCO	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR	AT5G67100	0	DNA-directed DNA polymerases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	8246138	8269784	+

Transcript Sequence
>GWHTAAEX005810 GATCCGATTTTTAATTCATTTGTTTTCCCTCCATAATCAGGTTACACCTCTCGAATTTGGCAGAAATCGAGGGTGCGATGTCGGACTCCGCCTCTCATGGCCGCCGGAGTCGTGCCAGAGGACAGGATTCCACAATCCGCGCCGAGGCTCTGGAGCGTCTCAAGGCCCTTCGTAGCTCCGGCAGCAGGCGTTCGGTTACCAGCGTCAAATTAGAGCAGCCTATATACGACACCGTTGAACCGGGCGATTACGATGCTCTTGTTGCCCTCCGTCGTGAAGATGCTAGCAGCTTTATTGTTGACGACAATGGCCTTGGATATGCGGACGACGGCCACGAAGAGGATTGGTCGAACCCTAGCTTTGCTCACTTTTCCTCCGAGGAATCATCCGAAGAGAAAGAGGGGAAGCAGAAGAAGGCGAAAGGGGCGAAGAAGGATCCCGTAGCTAAGAAGCCCCCGCCTTCATCTTCACCGGCCGCCGCCTCCCTTTTGGGAAATCAGCTACTTTCTGCGATATTCACTTCCTCCATTTCAAAGAAGAACAATGGAATAAAAACTTCCTCACTGACTTCTGACAGTCTAATTGATGATGTTATTGCTGAGTTTGCTCCCGACGAGGCTGACCGAGAAAAGAGGCGAAGGGGATCTTCCACGGGGACTCGAAATTCTTCCTTGCTCCCGGTTATACCCGTCAAGGCTGAGATGCTGCGTGTTCCTGTTGAAACTGGACTACCGGAAGCATCTATCAATGATGAATTTGTGGCTCAGATTCAGGAAATAGGTAGAAAGAGAAATCAAGAGGAAGAAACGATAGAAAAAGAGGATTTATTTATACAATCTAAGGTAGAAGAGGTGGGCATGACCAATTTGGATGCTGTGGAAAACATCAGCCAGGGAGTGGAAATAAACTTAACTGAAAATGGGAAGTGCTTCCCACTCAACTCTAAGCTAAAGAAGGAAGAGAAAAAGATGGAGTTCAGTGCAACTGCTGGGTGGAAGGAAGTTTGCGGTGAAGAGGGATCTGGCAGACCTATTCAAGTCGAATCAAATTGCAATGTGGACGATAAATCTGAGTTTGAGCTTGATTCTGATGGATCATTATCTTTTTATATCATAGATGCCTATGAAGAATCTTATGGTGCCAATACGGGGAATGTGCATCTTTTTGGGAAGGTTAAAGCTGGTGGTGCATATCATAGTTGCTGTGTGGTTGTAAAGAACTTGCAGAGATGTGTGTATGTTATCCCCGATAACTCTGTATTTCCTAGAGACAAAGTAGCAGACATTGAGAGAAATTTTGCTGATTCTCCTTCGGATTTACGAGGAGCTCTCCAAGAAATGGCATCAGGATTGAAAAATGAAATAACAAAAAGATTGTTGAACCTTAATGTTTCAACATTTAGCATGTTGCCCGTTAAGCGTGGCTATGCGTTTGAGCGTACTGACATACCCAGAGGAATGTATTATGTAGTCAAGACCACATACCCATTCAAGGACCCACCCCTCCCAGCAGATCTAAAGGGTGAAAATTTCATTGCATTACTTGGGACACACTGCAGTGCACTGGAGCTGTTTTTAATTAAAAGGAAAATAAAAGGCCCCTCTTGGTTATCAATTTCAAGATTTGCCAGCAGTACAGCTTCTGAACGGGTTAGCTGGTGCAAATTTGAAATAGTAGTTGATTGCTCCAAAGATATATTAAACTCTACGTCAAAGAATGTTCTGGAAATCCCTCCATTGATAGTTTCAGCAATAAACCTGAAGACTATCATTACTGAGAAAAATGCAAATGAAATTGTCTCTGCTTCCGTCATCTGTTTTCATAATATAAAGGTTGATGGCCCAATGATGGCTTCTGAGTGGAAAAGAAAGGGGATGCTAAGTCATTTTACTGCTATTCGAAAACTTGATGGAGATATATTTCCAATAGGTATTCAAAAAGAAGTTGCGGATAGAAACTTGAATGCTGGTACAAATGTATTGGCATTGGAAAGCAGTGAAAGGGCTTTAATAAATCGTCTGATGATTGAACTTCATAAAATGGATTGCGATGTGTTTGTTGGACACAACATATCTGGATTTGATCTTGATGTTCTTCTCCACCGAGCACAGGCTTGCAAGGTACCAAGCAGCATGTGGTCCAAGATTGGCCGGCTTAAGCGCTCTATAATGCCTAAGATTACTAAAGGTAGTGCTGTTTACGGTTCTGGAACTAGTTTAGGGATCATGTCTTGCATTGCAGGTCGACTTTTATGTGATACCTATTTGAGCTCTCGAAGCATTTTGAAAGAGGTAAGTTATTCTTTGACACAACTGGCAAAAACCCAACTTAATAAAGATAGGAAGGAGCTTAGCCCTCATGATATTCCTGTAATGTTCCAAATGTCAGCTGCACTGCTCCAATTGGCTGAATATGGAGAGACTGATGCTTGGTTATCTTTGGAACTTATGTTTTCTTTGAGCATTCTTCCTTTGACAAGGCAACAATCAACTATCAGTGGAAATCTCTGGGGAAAAACGCTTCAGGGAGCAAGAGCACAACAGGTGGAGTGCTTGTTGTTACATGCCTTCAATGCAAAAAAGTACATGGTGCCTGACAAAGTTTCAGCTCGAAGAATGGAAACAACTACGAATAAAAGAAAAACAGCAGTTGGTTTCAATGGTGAGGATGCTGATGATTTGGGTGAAATGGCTTTTGATAATGAAAGGCAACTTGTTGGCCAAGGAAGAGGGAGGAAAGGACCTACATACTCTGGTGGATTGGTTTTGGAACCTAAGAAGGGCCTGTATGACAAATTCATATTACTTCTGGACTTTAATAGTCTTTATCCTTCTATTATTCAGGAGTACAATATTTGCTTTACTACTGTTGAAAGACCCATTGAAGATATCATTCCAAATTTACCAGCATCCAAGAATGCTGGGATTTTACCTGAGTTGTTAAGAACCTTGGTTGAAAGAAGAAAAACAGTTAAAAAATTGCTAAAGAATGCTTCTGGTCACAAAGTACGACAACTTGATATCCAACAACAGGCGTTGAAGCTCACTGCTAACAGTATCTATGGCTGTTTGGGCTTTCCCAGTTCGAGATTTTATGCAAAACCAATTGCTGAGCTCATAACATCTCAAGGAAGAGAAATTTTGCAAAGCACTGTGAATCTTGTCCAGAACAACCTGAACTTAGAGGTGGTTTATGGAGATACAGATTCTATTATGATCTTTAGCGGGGTGGTTGATATTTCTAAAGCTAAAACGATTGCTGAAAAAGTCATTCAAGAGGTTAACAAGAAATATCGATGTCTGGAGATTGACCTTGATGGCTTGTACAAGAGAATGCTTCTTCTTAAGAAAAAGAAATATGCTGCTGTTAAAGTGCAATCTAAGAATGGAGTAGACTATGAGGTTATTGAACGCAAGGGCCTTGATATGGTTAGACGTGACTGGAGTCTGTTATCAAAAGAAATAGGCGATTTTTGTCTTAACCAGATATTGTCTGGAGGGGCTTGTGATGATGTTTTGGAGTCAATTCATGGTTATTTGATGAAGGTGCAAGAGGAAATGAGAAAGGGAGAGATTGCTCTTGAAAAGTTCATTATAACAAAGGGCTTAACTAAACAGCCGGAAGATTATCCAGATGCTAAGAACCAACCTCATGTGCAGGTGGCCCTAAGGTTGAAGAAAAATGGTTACTCAGATTGTTCGGCTGGTGACACAATACCTTATATCATTTGCTGTCAGCAGGATGGTTCACCCGGTTCCCTAAGTGGAATAGCTCAAAGAGCCAGGCATCCTGATGAGCTGACTAGAGACACTGGTGAATGGATGATTGACATTGATTATTACTTGTCACAACAGATTCATCCAGTAGTTTCTCGTCTATGTGCCTCAATTGAGGGCACAAGCCCGGCAAGGCTGGCCGATTGTCTCGGGCTTGATTCATCAAAGTTCCAACAACATAAGATACCTGAGGTTGATAGCACGAACATGCCAAGAGTGATTCTATCAGCCATAGATGAGGAAAGGTATGGTGATTGCGAGCCGCTGCGGTTAACATGCCCAAGCTGTTCTAGTTCGTTTGACTGCCCACCAGTGTCCAGCTTCTTTTCCTCCAGGATCAATGGAAGCTCATTTAATTCACAAGCTGAAAGTAAATCAGTTGTAAGCTTTTGGCACAGAATGAGATGCTCAAGATGCCCGGATAATGTTGATAGCTGTAAAATAACACCAGCTATGATTGCTAACCAGGTGAAAAGGCAGGCAGACTATTTCATCTCCTTGTATTACAAAGGAGTGATGATGTGTGATGATGAGACATGCAAATACATCACCCGTCGTGTGAGCCTTAGGGTCATCGGTGAATCTGGGCGAGGAACAGTCTGCCCAAACTATCCTCGGTGCAGCGGGCAACTTGTCAGACAATACAATGAGGCGGATTTATACAGGCAACTATCTTACTTCCACTTTGTGTTGGATGCTGAAAGGTGCATTCAAAAGCTCGATAAAAAATCTGTGGAAGTGATTGAAGAGGATTTTGCTGCCGTCCTTTCTGCCGTTGATCTTGCCGTGACTGCGATGCGGAAGATTAGGGATCGGAGCGCGTATTGCTGGGTGCGGTTGAAACATTTTACCATACCTGTTTGATTGGGTTAGTCGAGATTTCAATACCTTTGGTCCCGGCGAACTGCTTGGCGAAGAGTGATTTATATATGCATGTGTATGTCCTAAAATAAGACAATGGAAGCTATGCATTATAGAATTATGTTATTAAATTATGCAAGTAGTGTATGCATTTCTTTGTTTAACTGCTTGGTTTGGAATGAGCTGAAAGGAATTATTAGTATACATGTTTTTTTTTTCTTTCTTCAATGTAAAAAGTTTGAAACGAAAAGAGAGTATTGAAGCCGACAGAATTTTTCAGACTAGAGCCAA

Network for GWHGAAEX005810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12254.7	DNA_pol_alpha_N	25	90	5.80E-17
PF03104.18	DNA_pol_B_exo1	373	744	2.30E-29
PF00136.20	DNA_pol_B	805	1270	6.00E-124
PF08996.9	zf-DNA_Pol	1312	1515	6.20E-38

Protein Sequence

>GWHPAAEX005810
MSDSASHGRRSRARGQDSTIRAEALERLKALRSSGSRRSVTSVKLEQPIYDTVEPGDYDALVALRREDASSFIVDDNGLGYADDGHEEDWSNPSFAHFSSEESSEEKEGKQKKAKGAKKDPVAKKPPPSSSPAAASLLGNQLLSAIFTSSISKKNNGIKTSSLTSDSLIDDVIAEFAPDEADREKRRRGSSTGTRNSSLLPVIPVKAEMLRVPVETGLPEASINDEFVAQIQEIGRKRNQEEETIEKEDLFIQSKVEEVGMTNLDAVENISQGVEINLTENGKCFPLNSKLKKEEKKMEFSATAGWKEVCGEEGSGRPIQVESNCNVDDKSEFELDSDGSLSFYIIDAYEESYGANTGNVHLFGKVKAGGAYHSCCVVVKNLQRCVYVIPDNSVFPRDKVADIERNFADSPSDLRGALQEMASGLKNEITKRLLNLNVSTFSMLPVKRGYAFERTDIPRGMYYVVKTTYPFKDPPLPADLKGENFIALLGTHCSALELFLIKRKIKGPSWLSISRFASSTASERVSWCKFEIVVDCSKDILNSTSKNVLEIPPLIVSAINLKTIITEKNANEIVSASVICFHNIKVDGPMMASEWKRKGMLSHFTAIRKLDGDIFPIGIQKEVADRNLNAGTNVLALESSERALINRLMIELHKMDCDVFVGHNISGFDLDVLLHRAQACKVPSSMWSKIGRLKRSIMPKITKGSAVYGSGTSLGIMSCIAGRLLCDTYLSSRSILKEVSYSLTQLAKTQLNKDRKELSPHDIPVMFQMSAALLQLAEYGETDAWLSLELMFSLSILPLTRQQSTISGNLWGKTLQGARAQQVECLLLHAFNAKKYMVPDKVSARRMETTTNKRKTAVGFNGEDADDLGEMAFDNERQLVGQGRGRKGPTYSGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVERPIEDIIPNLPASKNAGILPELLRTLVERRKTVKKLLKNASGHKVRQLDIQQQALKLTANSIYGCLGFPSSRFYAKPIAELITSQGREILQSTVNLVQNNLNLEVVYGDTDSIMIFSGVVDISKAKTIAEKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQSKNGVDYEVIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGACDDVLESIHGYLMKVQEEMRKGEIALEKFIITKGLTKQPEDYPDAKNQPHVQVALRLKKNGYSDCSAGDTIPYIICCQQDGSPGSLSGIAQRARHPDELTRDTGEWMIDIDYYLSQQIHPVVSRLCASIEGTSPARLADCLGLDSSKFQQHKIPEVDSTNMPRVILSAIDEERYGDCEPLRLTCPSCSSSFDCPPVSSFFSSRINGSSFNSQAESKSVVSFWHRMRCSRCPDNVDSCKITPAMIANQVKRQADYFISLYYKGVMMCDDETCKYITRRVSLRVIGESGRGTVCPNYPRCSGQLVRQYNEADLYRQLSYFHFVLDAERCIQKLDKKSVEVIEEDFAAVLSAVDLAVTAMRKIRDRSAYCWVRLKHFTIPV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02320	POLA1	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006260	Biological Process	DNA replication
GO:0001882	Molecular Function	nucleoside binding
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.760
SRP064423	SRR2545915	Juvenile tuber	23.640
SRP108465	SRR5643513	five period of Gastrodia elata	13.990
	SRR5643514	five period of Gastrodia elata	15.050
	SRR5643515	five period of Gastrodia elata	11.460
	SRR5643524	five period of Gastrodia elata	13.200
	SRR5643525	five period of Gastrodia elata	4.690
	SRR5643528	five period of Gastrodia elata	2.830
	SRR5643658	five period of Gastrodia elata	3.620
	SRR5643659	five period of Gastrodia elata	14.610
	SRR5643660	five period of Gastrodia elata	16.380
	SRR5643661	five period of Gastrodia elata	14.860
	SRR5643662	five period of Gastrodia elata	12.730
	SRR5643663	five period of Gastrodia elata	11.640
	SRR5643664	five period of Gastrodia elata	11.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.540
SRP279888	Gastro	Gastrodia elata tuber	20.32
	Juven	Juvenile tuber	37.91
	Mother_Gastro	Mother tuber of Gastrodia elata	13.37
	Mother_Juven	Mother tuber of Juvenile	23.37