Gene detail

Detail information of GWHGAAEX005813/evm.TU.scaffold_170.4

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502236\|ref\|YP_001957953.1\|	9.00E-45	hypothetical protein Aasi_0854 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG1550	0	Extracellular protein SEL-1 and related proteins
nr	gi\|672107691\|ref\|XP_008781053.1\|	0	PREDICTED: protein sel-1 homolog 2 [Phoenix dactylifera]
Swissprot	tr\|Q9LM25\|HRD3A_ARATH	0	ERAD-associated E3 ubiquitin-protein ligase component HRD3A {ECO:0000305} (Precursor)
trEMBL	tr\|M5WDY4\|M5WDY4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11506.1}
TAIR	AT1G18260	0	HCP-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000169	602606	637292	-

Transcript Sequence
>GWHTAAEX005813 ATGCTGCGCCGGCAATGTCTCTACACCGTCCTCCTCCTCCTCCTGTATTTGCTCCCCCTTGCACACTCCCTTCGCCCTTTCCTGCTTGTAATCACCAACGACGATTTCAAGGATCTTTCGTCTGCCTCAACCACTGACGAATCAGCTGACTCCTCCACTGACGAGTCCGCAGACTGGGACGACTTCGGAGACCCTGATAGCAGCTTCGAGGATGATCATGATCCCGGATCCTGGCGGCCCATTTTGGAACCCTCGTCTTTGCTCCCCTCCAATTCCTCTGACGACGTCCGTCATTCCCTCTATTTCTCAGGTGTACGAGATATGATCAGCGCCGCATCATCCGGCGAACCCGCTGCTATGGATGCTGCTGCCTCCCAGATCGAGGCCTCCGCCTCTGCCGGCTTTCCTCACTCCCAATCGACTGTCGCCTTCCTCTACGGCACTGGACTCCTCCGCCGACAAAGCCGCCCCAAGTCATTCCTTTATCACAGTTTCGCGGCTGACGGTGGTAACATGCAGTCTAAGATGGCTCTTGCCTATACCTATTACCGTCAGGACATGTTTGACAAGGCCGTGAAGCTCTACGCAGAGCTGGCGGAAGCTGCGGTGGCGAGCTTTCTTATTTCTAAGGACCCTCCAGTTATTGAGCCTGTTAGGATCCACAGCGGCTCGGAGGAGAACAAGGAGGCATTGAGGAAGTCTCGAGGAGAGGATGATGAGGATTTTCAGATTACTGAGTACCAGGCGCAGAAGGGAAATGGTGCTGCAATGTATCGGATCGGACTGTTTTACTACTATGGATTAAGAGGAGTTAAGAGAGATCATAGAAGGGCACTGTACTGGTTTTCAAAGGCTGTAGAGAAGGGGGAGCCTAGGGCAATGGAACTACTTGGGGAGATTTATGCTAGGGGGGCTGGTGTGGAGAGGAACTACTCCAAGGCTTTGGAGTGGCTTACACTTGCATCAAAGCAGCAGCACTACTCGGCTTACAATGGTTTGGGATATCTTTATGTGAAAGGTTATGGAGTTGATAAGAAGAATTTAACCAAGGCAAAATATTTTGAGAAGGCTGCTGAAAATAAAGAACCTGGGGGCCATTATAACCTGGGCGTGTTGTATCTCAAGGGCATTGGCGTGAAAAGGGATGTGACACTAGCCTGCAAGTATTTTCTTACAGCAGCTAATGCTGGTCAGCCAAAGGCTCTTTACCAAGTGGCAAAGTTGTTTCAAAGAGGCATAGGTCTTAAGAAAAATCTTCCTTTGGCTGTATATTTGTACAAAATGGTAGCAGAGAGGGGACCTTGGAGTTCTCTGTCAAGGTGGGCTTTAGAATCTTATTTAAAAGGAGATGTAGGAAAAGCCCTCCTTTTATACTCTAGAATGGCTGAGCTTGGGTATGAGGTAGCACAGAGCAACGCAGCATGGATTCTTGATAGATATGGGGAGCAGAGTTTATGCATGGGAGAATCTGGGTTTTGCACAGACTCAGAAAGACATCTTCAAGCACATTCTTTATGGTGGCAGGCTTCAGAGCAGGGTAATGAACATGCTGCTTTACTGATTGGGGATGCTTACTACTATGGAAGGGGAACTGAGAAAGATTTTGAACGTGCTGCTGAAGCTTATACGCATGCCCAATCACAATCTAATGCACAGGCCATGTTCAATCTTGGATACATGCATGAGCATGGTGAAGGACTTCCACTAGATCTACATCTGGCAAAGAGGTATTACGATCAGGCCCTGGAGAATGATCCAGCTGCAAAACTTCCTATCAAACTTGCACTTGTGAGCTTGTGGATTCGGCAAACTTATCCCGATAGTTTTTTGATTCGGGTGGTCGATTCGCTGCCATTCGTATTCCCAAGAATAGAGGTGTGGGTGGAGGATGTTCTGCTTGACGAAGGCAACGCAACCATTCTGGCCCTCTTTGTGTGCCTCCTCACCGTTCTTTATCTCCGCGAACGCCACCGGCGAAATGCAGCTGCCGTTCCTCCAGCTGCTGCTATTCCTCAGCAACCCCGCGGTGATGATGATGGTCATGGCGATGGCGGCAATGATGCTTATGATGGTGATGGTGATGCTCCCCACAATTAG

Network for GWHGAAEX005813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08238.11	Sel1	255	289	5.20E-10
PF08238.11	Sel1	291	326	9.50E-07
PF08238.11	Sel1	328	360	0.012
PF08238.11	Sel1	366	397	1.40E-05
PF08238.11	Sel1	399	433	0.017
PF08238.11	Sel1	448	466	43
PF08238.11	Sel1	516	539	1.5
PF08238.11	Sel1	551	585	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14026	SEL1, SEL1L	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.770
SRP064423	SRR2545915	Juvenile tuber	56.710
SRP108465	SRR5643513	five period of Gastrodia elata	53.000
	SRR5643514	five period of Gastrodia elata	54.920
	SRR5643515	five period of Gastrodia elata	57.330
	SRR5643524	five period of Gastrodia elata	55.730
	SRR5643525	five period of Gastrodia elata	79.510
	SRR5643528	five period of Gastrodia elata	90.390
	SRR5643658	five period of Gastrodia elata	73.510
	SRR5643659	five period of Gastrodia elata	65.370
	SRR5643660	five period of Gastrodia elata	64.760
	SRR5643661	five period of Gastrodia elata	77.260
	SRR5643662	five period of Gastrodia elata	52.470
	SRR5643663	five period of Gastrodia elata	67.930
	SRR5643664	five period of Gastrodia elata	55.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.570
SRP279888	Gastro	Gastrodia elata tuber	46.55
	Juven	Juvenile tuber	39.00
	Mother_Gastro	Mother tuber of Gastrodia elata	42.77
	Mother_Juven	Mother tuber of Juvenile	43.08