Detail information of GWHGAAEX005819/evm.TU.scaffold_170.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672131347|ref|XP_008789232.1| | 0 | PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q69T58|ROC8_ORYSJ | 0 | Homeobox-leucine zipper protein ROC8 |
| trEMBL | tr|A5BQ38|A5BQ38_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN83483.1} |
| TAIR | AT1G73360 | 0 | homeodomain GLABROUS 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000169 | 1570482 | 1575571 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005819
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 39 | 94 | 9.60E-18 |
| PF01852.18 | START | 233 | 456 | 3.80E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.180 |
| SRR2545915 | Juvenile tuber | 0.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.860 |
| SRR5643514 | five period of Gastrodia elata | 0.720 | |
| SRR5643515 | five period of Gastrodia elata | 0.200 | |
| SRR5643524 | five period of Gastrodia elata | 0.690 | |
| SRR5643525 | five period of Gastrodia elata | 0.690 | |
| SRR5643528 | five period of Gastrodia elata | 0.220 | |
| SRR5643658 | five period of Gastrodia elata | 0.180 | |
| SRR5643659 | five period of Gastrodia elata | 0.290 | |
| SRR5643660 | five period of Gastrodia elata | 0.260 | |
| SRR5643661 | five period of Gastrodia elata | 0.440 | |
| SRR5643662 | five period of Gastrodia elata | 0.310 | |
| SRR5643663 | five period of Gastrodia elata | 0.270 | |
| SRR5643664 | five period of Gastrodia elata | 0.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.17 |
| Juven | Juvenile tuber | 0.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.53 | |
| Mother_Juven | Mother tuber of Juvenile | 0.79 |