Gene detail

Detail information of GWHGAAEX005820/evm.TU.scaffold_170.20

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2273	Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins
nr	gi\|743789832\|ref\|XP_010923012.1\|	PREDICTED: sorting nexin 2A, partial [Elaeis guineensis]
Swissprot	tr\|Q8L5Z7\|SNX2A_ARATH	Sorting nexin 2A
trEMBL	tr\|M0TSC8\|M0TSC8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P21250_001}
TAIR	AT5G58440	sorting nexin 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000169	1610117	1637463	+

Transcript Sequence
>GWHTAAEX005820 GTTTGTTGAACCTTTGTGCCAACGTAGTGCGGAGGAACGTACCGCTGCAGCATTCTCTCCTCGGAGTACACATCGTTAACTCCACCCCAAAGCGCGGAATGGATCCCGGAGAGAGACAATTCGGTATCGACCCCCTTTGGCCGAAGGAGGAGATGGAGTCTCTCACACTTGCCGAAGGCCCCCTTGCCGCCGTCCCTTCAGACGGAAACGACCCTCTTTCTTTCTCATCCCCTGCGTCCTCTTTCACGGATTCCTCTTTTTCTTTTTATGCAGAAGGCGTCTCCTTGCAATCCACAGATCCTCCCAAAGGTGTCACTGTTCCGCCCCCTCGCACGAAATCTGGCGAAGATTCCGATTACGTCAAGATAACGGTTTCCGATCCCCAAAAGGAATCGGAGCCAACGGTTTCGCTCGTCCCAGGCAGCGGCACCTTCGTGTCATATCTCATCTCCACTCGCCCTCGAGCCGCAGATTCTTCTGGCTCCCCTCAAGAATTCTCCGTCCGACGCCGCTTTCGCGATGTCGTCACACTTGCCGACCGCATCGCAGAGTCCCATCGTGGCTTCATCATCCCTCCCCGCCCTGAAAAGAGTGTCGTTGAGAGTCAGGTCATGCAAAAGCAAGAGTTCGTCGAGCAACGCCGCACGTCCCTGGAGAAATATCTTTACAAGCTTGCTGAGCATCCCGTCATCGGAAAGAGTGATGAATTGAAGGCCTTTCTCCAGGCGCCAGGGAAATTCCCGTTGCCAGCAACCACGGACATGGCTTCAAGGGTTTTGGATGGGGCCGTGAGGCTTCCGAAGCAGTTGTTTAGTTCTGGAGAAGCGGGAAGGGGGTACGTTGTAGACCCGCAGGATGCGGTGCAGCCGGCAAAAGGAGGAAGAGATTTACTGAGAATGTTCAAGGAGTTGAAGCAGTCAGTGGCTAATGATTGGGGAGGAGCTAAACTCACTGTGGTGGAAGAGGATGTTACCTTTTTGGAGAGGAAGGAGAGAGTACTGGATCTGGAGCAGCAACTCTCCACTGCTTCTCAGCAGGCCGAAGCTCTTGTCAAGGCTCAGCAGGATATGTCAGAAACAATAGGCGAGTTGGGATTGGCGTTTATTAAACTAGGAAAGTTTGAATCAGAGGAGTCTGTTTGTGATTCTCAAAGAATACGAGCTTCTGATTATAAGCATCTGGCTACTGCTGCTGTAAGGGCAAGCAGAGCTTATCGAGAATCAAATTCACTGTCAATGAAACATCTGGATAAATTACATGAATATTATGGACTGATGTTAGCTGTACATAATGCTTTCTCTGATCGCTCAAGTGCATTGGTAACCCTACAAACGCTGATATCAGACTTGTCTTCCTTGCGCTTGAGAGAAGAAAAACTTGAAGCTGCTTCTTTAAAGCTATTTGGTGGCGAGAAAACTAGGATTCGCAAATTGGAGGAGCTGAAAGAAACAATTATAGTTACAGAAGATGCCAAAAATATTGCATTTAAAGAATATGAGCGAATTAAGGACAATAATAGAAGTGAACTTGATAGATTAGACAAAGAAAGGCGTGAAGATTTTCTTGCCATGATCAAAGGCTTTATAGTTTGTCAGGTTGGATGTGCTGAGAAAATGGCAGGCATATGGACGCAAGCCGCTGGAGAGACGAATAGATATGCTAATGAAACAGCTTGAGCTGTACAGATTCAGCTCGGAGAGTTTTTGTTTAGGCGTTCTCTCCGCAGGCTATATTGTATGTACAACTGAGCTTTCAATAACAATGTGACTTATTGTCTGTACTGCTTTGAATAACAATGCCACTGTTTCTAGTCGAGATCTGTGTTTCTGCTCTTCTTTCTTCTTATTAATGTATTTATTTTTTCTCTAGATGATAACCACAGGTTGCTTATGTGATAATTTGCTTCAATATGTTGAATTCATGACAACTTTATGTTTTCATTTGTTTAGGGCATTATTTGTTCCAAGAGTGCTGCTATTCTATTATTCCAAATTCTCCCCAAAAGCAGG

Network for GWHGAAEX005820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00787.23	PX	89	209	9.10E-19
PF09325.9	Vps5	283	512	3.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0035091	Molecular Function	phosphatidylinositol binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.800
SRP064423	SRR2545915	Juvenile tuber	40.230
SRP108465	SRR5643513	five period of Gastrodia elata	47.890
	SRR5643514	five period of Gastrodia elata	51.350
	SRR5643515	five period of Gastrodia elata	46.260
	SRR5643524	five period of Gastrodia elata	49.610
	SRR5643525	five period of Gastrodia elata	40.130
	SRR5643528	five period of Gastrodia elata	37.660
	SRR5643658	five period of Gastrodia elata	42.270
	SRR5643659	five period of Gastrodia elata	50.640
	SRR5643660	five period of Gastrodia elata	53.260
	SRR5643661	five period of Gastrodia elata	48.300
	SRR5643662	five period of Gastrodia elata	42.040
	SRR5643663	five period of Gastrodia elata	51.200
	SRR5643664	five period of Gastrodia elata	47.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.160
SRP279888	Gastro	Gastrodia elata tuber	74.04
	Juven	Juvenile tuber	101.15
	Mother_Gastro	Mother tuber of Gastrodia elata	97.69
	Mother_Juven	Mother tuber of Juvenile	135.23