Gene detail

Detail information of GWHGAAEX005822/evm.TU.scaffold_170.22

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|183221265\|ref\|YP_001839261.1\|	6.00E-09	RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOG	KOG0118	9.00E-42	FOG: RRM domain
nr	gi\|743787007\|ref\|XP_010922315.1\|	8.53E-81	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L3X8\|SRC30_ARATH	3.00E-42	Serine/arginine-rich SC35-like splicing factor SCL30
trEMBL	tr\|W1PD81\|W1PD81_AMBTC	1.00E-76	Uncharacterized protein {ECO:0000313\|EMBL:ERN07882.1}
TAIR	AT3G55460	9.00E-42	SC35-like splicing factor 30

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000169	1661070	1686686	+

Transcript Sequence
>GWHTAAEX005822 AAAACCCTCATCTTAATTTTCAGCACAGAGCCTCTCCTTGCACGATCGCCGCCATTGCTCCACCTGGCCGAGCCCCACCTCTCCTCTCCACGGCTTGGCCGTAACCTTCTAAGGCCAAGCATCTTCTTCCCCCTCCATAGCCGAGCACCTCTCCCTCTGTACACCTTTCTTTCCTCTCCGAAAACAACTTCTACGAGCTGCAGCCGAGAGCCCCTCCTCCATGGCCGAGGGCTAGTTCTACCTTGCTGAGCCCCGATCCTCCTCTCCTTCGACTGGAGAACTTGGAGCAAGTCAATCATCTTTCAGCGCAAGGCCGAAACGTCCAAATCCTTCCTCCCGTCTTCTCCAACTGAAAGCTATCATTGCTGCGGCCGCCGTCAACCATCGCTCCACCCTTCATTAATCTGGTGTTGTGAATGCTATCTCATCCCAACCAATCATTAATTGCAAGCTCATATCGCACGCACAAGTTCTATTATGAGGAGGTACAGCCCTGGTTACTATAGCCCACCAAGAAGAGGATATGGTGGCAGGGGAAGAAGTCCGCCAAGGAGAGGGTATGGTGGTCGCAAGGAACAAAATAATGGGAGCCTTTTAGTTCGAAATATACCCCTGAATTTCAGAGCTGAAGATCTTCGTGTTCCATTTGAAAGATATGGTCCAGTAAGGGATGTTTACATTCCAAAGGACTATTATTCAGGGGAACCAAGGGGGTTTGCTTTTGTGCAATACGTTGACCCATATGATGCTTCGGAAGCTCAATATCACATGAATCGACAGATCTTTTGTGGTAGGGAAATTACTGTTGTTGTTGCTTCGGAAACAAGGAAAAGGCCTGAAGAAATGCGCAAAAGAGCCCGAGTTAGGGGAAGTGCCGGCTATGATGGTGGTCGCTCATCATATTATGGTCGGTCAGGCTCTCACTCAATTTCTCGATCACGCTCTCCGCGCTACCCATCCGACTCGAGGACATCCCACCGGTCAAGATCGTACTCTCCCTCGCAAAGACGTCGGAAGGACGGCTACTCTGCTTCTCCGAGAAGGCAAAGTGATGGCAATAATAGAAAGCAGCAGGCTGATCGCGAGGGCTTCTCTGCTTCACCCAGAGAAAGGCCGTCACGGCGCTCAAGATCCCCTATGGATGATTTCCGAGGGGGGCGCGGCGAGGACCGGAGGCGCATATCACACTCTTCAAAGAGTGAATAGAGTAAATTTTATCATCCATGTTTAGTTTTGATCAAGAGATATTTACTTGCGCAACACCAGAATATATATATAACATTCGTACCCAGCACCTAAACCTTAATTATTACCAAAAGCCTTAATTATTACCAAAGGTGCGATACCATCTCATCTCTGAAGTCTCTATGGCACCTCTAGTATACTTGTAACCGGACTGTTTGGTGATATGTAGGTTTTTGAGGGTCAAGTAATTGAATTGAATTTCAGTTTATTCAAAATTGAGTATTTGAATTGATGTAATTTTGGAGTATAATTGATTTTTATGTTGGGGAAAAATTTGAGAATTTTGAGTGTAAATTAATCTGATTATAATGATTAGGTTCATTTAAT

Network for GWHGAAEX005822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	39	109	3.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12900	FUSIP1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.900
SRP064423	SRR2545915	Juvenile tuber	27.910
SRP108465	SRR5643513	five period of Gastrodia elata	32.480
	SRR5643514	five period of Gastrodia elata	31.620
	SRR5643515	five period of Gastrodia elata	37.630
	SRR5643524	five period of Gastrodia elata	33.040
	SRR5643525	five period of Gastrodia elata	34.940
	SRR5643528	five period of Gastrodia elata	44.820
	SRR5643658	five period of Gastrodia elata	29.210
	SRR5643659	five period of Gastrodia elata	48.170
	SRR5643660	five period of Gastrodia elata	50.870
	SRR5643661	five period of Gastrodia elata	45.270
	SRR5643662	five period of Gastrodia elata	57.610
	SRR5643663	five period of Gastrodia elata	48.240
	SRR5643664	five period of Gastrodia elata	48.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.750
SRP279888	Gastro	Gastrodia elata tuber	49.13
	Juven	Juvenile tuber	41.84
	Mother_Gastro	Mother tuber of Gastrodia elata	31.80
	Mother_Juven	Mother tuber of Juvenile	32.45