Detail information of GWHGAAEX005825/evm.TU.scaffold_170.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG20580Ypt/Rab GTPase activating protein
nrgi|743787700|ref|XP_010922482.1|0PREDICTED: TBC1 domain family member 8B-like isoform X1 [Elaeis guineensis]
trEMBLtr|C5XP18|C5XP18_SORBI0Putative uncharacterized protein Sb03g039030 {ECO:0000313|EMBL:EES03843.1}
TAIRAT3G550200Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016917194901770507-
Transcript Sequence

Network for GWHGAAEX005825

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00566.17RabGAP-TBC2254494.50E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.150
SRR2545915Juvenile tuber50.140
SRP108465SRR5643513five period of Gastrodia elata29.520
SRR5643514five period of Gastrodia elata26.440
SRR5643515five period of Gastrodia elata27.090
SRR5643524five period of Gastrodia elata24.540
SRR5643525five period of Gastrodia elata27.420
SRR5643528five period of Gastrodia elata30.520
SRR5643658five period of Gastrodia elata26.590
SRR5643659five period of Gastrodia elata29.570
SRR5643660five period of Gastrodia elata35.260
SRR5643661five period of Gastrodia elata30.620
SRR5643662five period of Gastrodia elata30.640
SRR5643663five period of Gastrodia elata29.130
SRR5643664five period of Gastrodia elata33.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.880
SRR6049655Rhizomagastrodiae_C368-T10_good_120.860
SRR6049656Rhizomagastrodiae_C368-T07_good_134.110
SRR6049657Rhizomagastrodiae_C368-T07_good_146.010
SRR6049658Rhizomagastrodiae_C368-T04_good_146.390
SRR6049659Rhizomagastrodiae_C368-T04_good_151.180
SRR6049660Rhizomagastrodiae_C368-T01_good_140.890
SRR6049661Rhizomagastrodiae_C368-T04_good_138.350
SRR6049662Rhizomagastrodiae_C368-T01_good_129.050
SRR6049663Rhizomagastrodiae_C368-T01_good_130.750
SRR6049664Rhizomagastrodiae_C368-T10_good_129.630
SRR6049665Rhizomagastrodiae_C368-T10_good_129.630
SRP279888GastroGastrodia elata tuber 46.73
JuvenJuvenile tuber61.51
Mother_GastroMother tuber of Gastrodia elata 31.38
Mother_JuvenMother tuber of Juvenile 49.52