Detail information of GWHGAAEX005829/evm.TU.scaffold_170.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG39012.00E-51Transcription initiation factor IID subunit
nrgi|747065842|ref|XP_011079578.1|1.28E-75PREDICTED: transcription initiation factor TFIID subunit 13 [Sesamum indicum]
Swissprottr|Q6NQH4|TAF13_ARATH4.00E-53Transcription initiation factor TFIID subunit 13
trEMBLtr|S8D1R8|S8D1R8_9LAMI8.00E-75Uncharacterized protein {ECO:0000313|EMBL:EPS73719.1} (Fragment)
TAIRAT1G026802.00E-51TBP-associated factor 13

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016920087222034087+
Transcript Sequence

Network for GWHGAAEX005829

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02269.15TFIID-18kDa301182.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03127TAF13 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006366Biological Processtranscription from RNA polymerase II promoter
GO:0046982Molecular Functionprotein heterodimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms298.170
SRR2545915Juvenile tuber195.280
SRP108465SRR5643513five period of Gastrodia elata72.370
SRR5643514five period of Gastrodia elata61.220
SRR5643515five period of Gastrodia elata79.210
SRR5643524five period of Gastrodia elata61.710
SRR5643525five period of Gastrodia elata121.410
SRR5643528five period of Gastrodia elata95.600
SRR5643658five period of Gastrodia elata84.100
SRR5643659five period of Gastrodia elata230.460
SRR5643660five period of Gastrodia elata277.790
SRR5643661five period of Gastrodia elata264.000
SRR5643662five period of Gastrodia elata309.710
SRR5643663five period of Gastrodia elata307.590
SRR5643664five period of Gastrodia elata360.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_172.960
SRR6049655Rhizomagastrodiae_C368-T10_good_135.100
SRR6049656Rhizomagastrodiae_C368-T07_good_145.250
SRR6049657Rhizomagastrodiae_C368-T07_good_1109.450
SRR6049658Rhizomagastrodiae_C368-T04_good_148.230
SRR6049659Rhizomagastrodiae_C368-T04_good_158.660
SRR6049660Rhizomagastrodiae_C368-T01_good_147.080
SRR6049661Rhizomagastrodiae_C368-T04_good_141.220
SRR6049662Rhizomagastrodiae_C368-T01_good_128.360
SRR6049663Rhizomagastrodiae_C368-T01_good_128.720
SRR6049664Rhizomagastrodiae_C368-T10_good_148.830
SRR6049665Rhizomagastrodiae_C368-T10_good_148.830
SRP279888GastroGastrodia elata tuber 175.01
JuvenJuvenile tuber70.90
Mother_GastroMother tuber of Gastrodia elata 83.64
Mother_JuvenMother tuber of Juvenile 62.75