Gene detail

Detail information of GWHGAAEX005831/evm.TU.scaffold_170.33

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	9.00E-66	Transcription factor, Myb superfamily
nr	gi\|693302202\|gb\|AIS35920.1\|	1.43E-104	MYB transcription factor 3 [Phalaenopsis equestris]
Swissprot	tr\|P27898\|MYBP_MAIZE	8.00E-67	Myb-related protein P
trEMBL	tr\|A0A096ZX72\|A0A096ZX72_PHAEQ	5.00E-105	MYB transcription factor 3 {ECO:0000313\|EMBL:AIS35920.1}
TAIR	AT5G49330	9.00E-66	myb domain protein 111

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000169	2135075	2138193	+

Transcript Sequence
>GWHTAAEX005831 GTATTAGCCATTATTCGGTCATTATCAAGTAAAAAAAAAGAAAACAATGCGAAATGCATGCATTTTCCTGCTCTCCCCTGCCTCTTATAATAATCGAGACTCGAGAGAGGCGAGAGAGAGACAGCGAGGAATTAACTAATGCTAAAAAATGACCAATTTAACTATATAGCGGCAGGCATTGAGGTCCGTCCAAGCGGGAAGCAGAGGAGCCCGGCCATTAAAGAACATGGGAAGAGCTCCCTGCTGCGAAAAGGTGGGTCTGAAGAAGGGAAGATGGACTGCCGAGGAAGACGACCTCCTCGTCAAGTACATTAAGACTAACGGAGAAGGCTCCTGGAGATCTCTGCCTAAGAAGGCTGGCTTGCTGAGATGCGGGAAGAGCTGCAGGCTCAGATGGATTAACTATCTGAGGGAAGACTTGAAGAGGGGAAACATTTCAAAGGAAGAAGAGGACACCATTATTCAGCTCAGAGCTAACTTAGGTAACAGGTGGTCGGTGATTGCTGGGCATCTCCCTGGAAGAACTGATAATGAGATTAAGAACTATTGGAACTCGCATCTGAGCAAGAAAATTGATGGGTCAAATAACAAAGATGAAGAAGAAAAAGAGGACACCGCCGGCGCCACCAAAGTTCGCAAGAGGAGGGGAGGGAGGCCGAGCAAGAAGAAGAAGGCCGCGGAGCAAGGCGAGAGCACTCCGTGCAAGGAGAGGGCGAGCGAAAAGCAGAAGAAGGGTGTGGAAGAGTTGAATGATGATGGTGCTGCGGATGGGGGGGAACTCATGGTTACAGACCGAGAACACGAGCAAAGCGCCTTGAAGGACTCGCCTTCATTGAGCGTTGTTGATCCAGAGAGGAATCAGTGTGGAGGGGCACTGAGCACAAGCGTAAGCTCGTCGAACCTGGTGGAGAAGGAGAGAGGAAAAGAAGGGAATGGAGGGGAAGTTGATCAAGTAGTGGTGTCAAACGAGGGAGGTTGGCTCTCTCTTGATGAAATTGAGAAGTTGGTTAATTGGGAGTGGGAGGATATAGCCCTAAGTTTGTGGGAGGGGGAAGGGGAGGGGGTTGGGGAGCCTTTGGTTTGGGATGATGGCTATGACCACGAGGATAGTGGCAAGTCTGGAGGATTTTTTGGCAACAGTAATGAAGAGTTTGATGCATTTAGGGATGTTGATTACTTTGATAATTGGCTTTTATCAGACGTGCTAATATAGACTTCGGTTTCTTGTGCTTATGATTTGTAGAGGTTGAGGGCACCTTATTTCAATAATAAGGATTTTGGATTAGGGTTTAGGAGAATCATCATATTTGCATTCGATTGATCTTCATTTTGTTAAGGAATAATGGCATGGATGCTTAATATCATTGTGATCCCATGTTCTTGGTTAAAAGTATTGACTATGTGCATCATCTTTGCTATGAAGGTATCCCACTAAAACTTGGTAAATAATTCTCATAAATTGACTTTGTTACTCTACATTTCTTTAATAGTAATACTAAGATAGAGAAAGTAGAAACACAAAGCTGTATCAAGGTTAG

Network for GWHGAAEX005831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	14	61	3.70E-15
PF00249.30	Myb_DNA-binding	67	112	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.180
SRP064423	SRR2545915	Juvenile tuber	1.440
SRP108465	SRR5643513	five period of Gastrodia elata	51.730
	SRR5643514	five period of Gastrodia elata	17.490
	SRR5643515	five period of Gastrodia elata	82.460
	SRR5643524	five period of Gastrodia elata	23.740
	SRR5643525	five period of Gastrodia elata	0.930
	SRR5643528	five period of Gastrodia elata	1.770
	SRR5643658	five period of Gastrodia elata	2.590
	SRR5643659	five period of Gastrodia elata	76.000
	SRR5643660	five period of Gastrodia elata	48.300
	SRR5643661	five period of Gastrodia elata	102.420
	SRR5643662	five period of Gastrodia elata	177.880
	SRR5643663	five period of Gastrodia elata	133.660
	SRR5643664	five period of Gastrodia elata	6.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.480
SRP279888	Gastro	Gastrodia elata tuber	4.03
	Juven	Juvenile tuber	2.25
	Mother_Gastro	Mother tuber of Gastrodia elata	0.25
	Mother_Juven	Mother tuber of Juvenile	0.74