Detail information of GWHGAAEX005833/evm.TU.scaffold_170.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-69 | FOG: PPR repeat |
| nr | gi|743821373|ref|XP_010932016.1| | 1.19E-148 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Elaeis guineensis] |
| Swissprot | tr|Q56XI1|PPR25_ARATH | 2.00E-69 | Pentatricopeptide repeat-containing protein At1g09410 |
| trEMBL | tr|V7D0S0|V7D0S0_PHAVU | 5.00E-110 | Uncharacterized protein {ECO:0000313|EMBL:ESW35233.1} |
| TAIR | AT1G09410 | 6.00E-69 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000169 | 2154415 | 2156509 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005833
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 49 | 77 | 1.90E-06 |
| PF01535.19 | PPR | 79 | 108 | 0.23 |
| PF01535.19 | PPR | 176 | 203 | 0.58 |
| PF01535.19 | PPR | 209 | 235 | 0.074 |
| PF01535.19 | PPR | 238 | 260 | 0.00044 |
| PF13812.5 | PPR_3 | 361 | 399 | 0.008 |
| PF01535.19 | PPR | 408 | 428 | 1.2 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.040 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.210 |
| SRR5643514 | five period of Gastrodia elata | 0.970 | |
| SRR5643515 | five period of Gastrodia elata | 0.890 | |
| SRR5643524 | five period of Gastrodia elata | 1.040 | |
| SRR5643525 | five period of Gastrodia elata | 0.580 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.030 | |
| SRR5643659 | five period of Gastrodia elata | 1.560 | |
| SRR5643660 | five period of Gastrodia elata | 2.200 | |
| SRR5643661 | five period of Gastrodia elata | 1.730 | |
| SRR5643662 | five period of Gastrodia elata | 2.230 | |
| SRR5643663 | five period of Gastrodia elata | 2.010 | |
| SRR5643664 | five period of Gastrodia elata | 2.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.86 |
| Juven | Juvenile tuber | 0.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.15 |