Detail information of GWHGAAEX005837/evm.TU.scaffold_170.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434394291|ref|YP_007129238.1| | 5.00E-07 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| nr | gi|743820143|ref|XP_010931704.1| | 0 | PREDICTED: cellulose synthase-like protein D5 [Elaeis guineensis] |
| Swissprot | tr|Q2QNS6|CSLD4_ORYSJ | 0 | Cellulose synthase-like protein D4 |
| trEMBL | tr|A0A061DS29|A0A061DS29_THECC | 0 | Cellulose synthase-like D5 {ECO:0000313|EMBL:EOX95192.1} |
| TAIR | AT1G02730 | 0 | cellulose synthase-like D5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000169 | 2216365 | 2220397 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005837
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03552.13 | Cellulose_synt | 365 | 880 | 2.00E-230 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00770 | E2.4.2.24 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.060 |
| SRR2545915 | Juvenile tuber | 0.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.720 |
| SRR5643514 | five period of Gastrodia elata | 1.840 | |
| SRR5643515 | five period of Gastrodia elata | 0.750 | |
| SRR5643524 | five period of Gastrodia elata | 1.320 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 0.030 | |
| SRR5643660 | five period of Gastrodia elata | 0.020 | |
| SRR5643661 | five period of Gastrodia elata | 0.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.070 | |
| SRR5643663 | five period of Gastrodia elata | 0.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.02 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |