Detail information of GWHGAAEX005838/evm.TU.scaffold_170.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146295422|ref|YP_001179193.1| | 1.00E-60 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| nr | gi|672174418|ref|XP_008807372.1| | 0 | PREDICTED: probable polygalacturonase [Phoenix dactylifera] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 1.00E-136 | Probable polygalacturonase |
| trEMBL | tr|M0RT83|M0RT83_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18030_001} |
| TAIR | AT3G16850 | 7.00E-170 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000169 | 2224088 | 2227692 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005838
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 201 | 480 | 1.90E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.460 |
| SRR2545915 | Juvenile tuber | 17.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.900 |
| SRR5643514 | five period of Gastrodia elata | 41.400 | |
| SRR5643515 | five period of Gastrodia elata | 53.220 | |
| SRR5643524 | five period of Gastrodia elata | 32.240 | |
| SRR5643525 | five period of Gastrodia elata | 68.260 | |
| SRR5643528 | five period of Gastrodia elata | 34.980 | |
| SRR5643658 | five period of Gastrodia elata | 72.760 | |
| SRR5643659 | five period of Gastrodia elata | 48.800 | |
| SRR5643660 | five period of Gastrodia elata | 37.480 | |
| SRR5643661 | five period of Gastrodia elata | 49.180 | |
| SRR5643662 | five period of Gastrodia elata | 36.120 | |
| SRR5643663 | five period of Gastrodia elata | 41.210 | |
| SRR5643664 | five period of Gastrodia elata | 53.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 82.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 80.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 78.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 59.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 55.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 75.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 69.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 69.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.68 |
| Juven | Juvenile tuber | 18.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.88 | |
| Mother_Juven | Mother tuber of Juvenile | 4.04 |