Detail information of GWHGAAEX005839/evm.TU.scaffold_171.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 6.00E-28 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 5.00E-124 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|672132854|ref|XP_008790017.1| | 1.07E-132 | PREDICTED: ras-related protein RIC2 [Phoenix dactylifera] |
| Swissprot | tr|P40393|RIC2_ORYSJ | 5.00E-129 | Ras-related protein RIC2 |
| trEMBL | tr|A0A068V7R7|A0A068V7R7_COFCA | 2.00E-129 | Coffea canephora |
| TAIR | AT1G16920 | 5.00E-124 | RAB GTPase homolog A1B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000165 | 575809 | 597559 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005839
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 15 | 175 | 1.50E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.110 |
| SRR2545915 | Juvenile tuber | 91.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 146.800 |
| SRR5643514 | five period of Gastrodia elata | 139.060 | |
| SRR5643515 | five period of Gastrodia elata | 122.160 | |
| SRR5643524 | five period of Gastrodia elata | 116.700 | |
| SRR5643525 | five period of Gastrodia elata | 256.410 | |
| SRR5643528 | five period of Gastrodia elata | 168.720 | |
| SRR5643658 | five period of Gastrodia elata | 230.740 | |
| SRR5643659 | five period of Gastrodia elata | 151.520 | |
| SRR5643660 | five period of Gastrodia elata | 179.830 | |
| SRR5643661 | five period of Gastrodia elata | 179.780 | |
| SRR5643662 | five period of Gastrodia elata | 192.730 | |
| SRR5643663 | five period of Gastrodia elata | 193.960 | |
| SRR5643664 | five period of Gastrodia elata | 267.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 222.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 218.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 189.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 273.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 338.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 415.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 253.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 275.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 132.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 191.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 152.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 152.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 162.96 |
| Juven | Juvenile tuber | 159.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 114.58 | |
| Mother_Juven | Mother tuber of Juvenile | 138.49 |