Detail information of GWHGAAEX005841/evm.TU.scaffold_171.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 1.00E-59 | GATA-4/5/6 transcription factors |
| nr | gi|743796151|ref|XP_010924658.1| | 3.01E-76 | PREDICTED: GATA transcription factor 12-like [Elaeis guineensis] |
| Swissprot | tr|O82632|GATA9_ARATH | 4.00E-60 | GATA transcription factor 9 |
| trEMBL | tr|M0SJI6|M0SJI6_MUSAM | 4.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31720_001} |
| TAIR | AT4G32890 | 1.00E-59 | GATA transcription factor 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000165 | 660293 | 665449 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005841
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 170 | 203 | 4.00E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.770 |
| SRR2545915 | Juvenile tuber | 5.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.720 |
| SRR5643514 | five period of Gastrodia elata | 2.250 | |
| SRR5643515 | five period of Gastrodia elata | 1.830 | |
| SRR5643524 | five period of Gastrodia elata | 1.780 | |
| SRR5643525 | five period of Gastrodia elata | 3.440 | |
| SRR5643528 | five period of Gastrodia elata | 6.540 | |
| SRR5643658 | five period of Gastrodia elata | 2.210 | |
| SRR5643659 | five period of Gastrodia elata | 4.430 | |
| SRR5643660 | five period of Gastrodia elata | 1.750 | |
| SRR5643661 | five period of Gastrodia elata | 2.370 | |
| SRR5643662 | five period of Gastrodia elata | 4.430 | |
| SRR5643663 | five period of Gastrodia elata | 3.060 | |
| SRR5643664 | five period of Gastrodia elata | 4.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.77 |
| Juven | Juvenile tuber | 1.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.16 | |
| Mother_Juven | Mother tuber of Juvenile | 8.35 |