Gene detail

Detail information of GWHGAAEX005842/evm.TU.scaffold_171.8

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	7.00E-127	FOG: PPR repeat
nr	gi\|695056512\|ref\|XP_009416481.1\|	1.02E-157	PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q3ECB8\|PP128_ARATH	2.00E-127	Pentatricopeptide repeat-containing protein At1g77170
trEMBL	tr\|K3XPY2\|K3XPY2_SETIT	9.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si003962m}
TAIR	AT1G77170	7.00E-127	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000165	1065695	1067493	+

Transcript Sequence
>GWHTAAEX005842 CCGACCCGTGCCAAAAGCTAAGTATGGTCGGTGGTTTGAACGAACGGCAGCATTACTTTAACTACGCACGTGTATCGTTAATGAAAGGTTTTCTCCATTTATGCATAAAATTAAGCAAATATGCATATAGGAACTACTGCATATACAGCTGCTAATAAAATTTCAATTTCTTGCTCAAAATGGAATCGGGCATGGCGGCCCGCTTGCAATCATGCAGCAATCTATCGGAGGCATCGGAAATCCACGGCTACGTGCTGCGGCGGCAGCTTTTGCCGGAACCCTACCATTGGAACGCGCTGATGCGGTGTTACCTGCGGCTGGTCCTCCCCTCAGTCGCCCTCCTCCTGTACGTGCAAATGACACGTGCTGGTTCATCTCCAGATCGGTACTCCCTCCCCATCGCCTTCAAAGCCGCCTTCATCTCCTTCTCCTTCTCCACCGGCCTTCAGCTCCACTCCGCCGCCCTCAAGCGCGGCCTCTCCCGCCATGAATTCTCCGAGTCCGCCCTCATCTCACTATACGGCAAAGCCGGTCTCTTCGCCCCCGCCCGCCAGCTGTTCGACGAAAATCCACAGAGGCGGCTCGGCTCCTGGAACGCCCTCATCAGCTGCTGCGCCCAGTCCGGCCGCTCCCACGAGGCTGTTGTCCTCTTCGCTGCCCTTCGCTGCTCTGGCGGGGCCCTCCCCGACCAGCTCACCATCGCCAGCGTGGCCTCCGCCTCCGCCGGCCTCGCCGACCCCGCCCTGGCCGGCCAGATCCACTGCTGCGCCATCCGCGCCCGCGGCCCCGGCCCCCGCGCCATCCCCCTCTGGAACTCGCTGATCGACATGTACGCCAAGTGCGGCCGCACGGACCTCGCCCTCTTAGTGTTCGACGAGATGCCCGAGCGGGACGTCTCGTCGTGGACGGCGATGATCATGGGCCTGGTCACGCAGGGCAGCCCGGGCCACGCCCTCGACCTCTTCCATGATATGGAGCGGGAAGGGGTGGCGCCCAACCACGTGACCATGGTCGCGGCGTTGTGCGCGTGCTCGCACGCCGGCCTTGTCGACGAGGGGATGAGGCTGTTCACAGCCGTCACGGCGGGCCAGGTCAGGGGCGTGAGGGCAACGGAGGCGCACTACGGCTGCGTGGCCGACATGCTCGGGAAGGTGGGAAGGGTCGCCGAGGCAGTCGGGGTCTTGGAGGGGATGCCGGGGCCGCCGAGCGTCGTGGCCTGGGGCGCCCTCCTCGGGGCGTGCGAGAAGCACAGGGAGGTTGCCGTCGGTGAGAGGGCTGCGGCCGAGCTGATGGAGCTCGAGCCCTGGAACGATGGTGTCTATGTTGTCCTATCGAATATTTACGCCGCCAGCGGGATGTGGGACCGCGTGGAGAGGGTCAGGAGGCTGATGAGGTGCAGAAAGGTGGGCAAGAACCCGGGTTATAGTCTCCCTGCATTATCATCATCCCCTTGAGCTCTTCTCCAAGTATTTACTTTACCCCTGCATACAGTATCATCCTCCCCTTCTATTTTCTCAAGAATTGAGCTGTTAATGGTGTTGTATTGCTAACATTACCCCATCTTAGACTCTTTCCAATCATTGGAAATTTCATGATAGAATAATGATGCTTAATATACAAAAATAGCCCTGTAACAATACCTCGCTCAGTGCCCCATTTTTCATATATACTTTTTCGGAACACAAGAAAACGGAGAAAAGACAAACAATTTCAATTGAAAAATATTCACAAACCAATATCAATTCATTTGAAAACCAACATAACCACCCCAAAAGAAACTATAATAACAGCTATAAATT

Network for GWHGAAEX005842

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	36	64	0.092
PF01535.19	PPR	108	129	1
PF01535.19	PPR	137	163	9.90E-05
PF13041.5	PPR_2	238	284	8.80E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.710
SRP064423	SRR2545915	Juvenile tuber	1.310
SRP108465	SRR5643513	five period of Gastrodia elata	5.060
	SRR5643514	five period of Gastrodia elata	3.680
	SRR5643515	five period of Gastrodia elata	5.840
	SRR5643524	five period of Gastrodia elata	3.690
	SRR5643525	five period of Gastrodia elata	2.180
	SRR5643528	five period of Gastrodia elata	1.880
	SRR5643658	five period of Gastrodia elata	1.010
	SRR5643659	five period of Gastrodia elata	6.400
	SRR5643660	five period of Gastrodia elata	6.490
	SRR5643661	five period of Gastrodia elata	7.330
	SRR5643662	five period of Gastrodia elata	11.370
	SRR5643663	five period of Gastrodia elata	5.510
	SRR5643664	five period of Gastrodia elata	5.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.270
SRP279888	Gastro	Gastrodia elata tuber	8.26
	Juven	Juvenile tuber	4.54
	Mother_Gastro	Mother tuber of Gastrodia elata	3.03
	Mother_Juven	Mother tuber of Juvenile	1.89