Detail information of GWHGAAEX005855/evm.TU.scaffold_172.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743870036|ref|XP_010905948.1| | 0 | PREDICTED: transcription factor TGA4-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q39162|TGA4_ARATH | 7.00E-157 | Transcription factor TGA4 |
| trEMBL | tr|M0SZ42|M0SZ42_MUSAM | 1.00E-178 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16630_001} |
| TAIR | AT5G10030 | 2.00E-156 | TGACG motif-binding factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000178 | 482444 | 499508 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005855
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 77 | 121 | 1.40E-08 |
| PF14144.5 | DOG1 | 165 | 240 | 1.70E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 69.860 |
| SRR2545915 | Juvenile tuber | 23.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.610 |
| SRR5643514 | five period of Gastrodia elata | 30.090 | |
| SRR5643515 | five period of Gastrodia elata | 24.580 | |
| SRR5643524 | five period of Gastrodia elata | 23.910 | |
| SRR5643525 | five period of Gastrodia elata | 121.880 | |
| SRR5643528 | five period of Gastrodia elata | 70.110 | |
| SRR5643658 | five period of Gastrodia elata | 113.460 | |
| SRR5643659 | five period of Gastrodia elata | 11.690 | |
| SRR5643660 | five period of Gastrodia elata | 13.860 | |
| SRR5643661 | five period of Gastrodia elata | 10.310 | |
| SRR5643662 | five period of Gastrodia elata | 35.440 | |
| SRR5643663 | five period of Gastrodia elata | 23.730 | |
| SRR5643664 | five period of Gastrodia elata | 41.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 67.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 90.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 103.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 69.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 77.97 |
| Juven | Juvenile tuber | 33.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 78.89 | |
| Mother_Juven | Mother tuber of Juvenile | 44.06 |