Detail information of GWHGAAEX005857/evm.TU.scaffold_172.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428226691|ref|YP_007110788.1|4.00E-33shikimate kinase [Geitlerinema sp. PCC 7407]
nrgi|672108322|ref|XP_008784558.1|1.63E-147PREDICTED: shikimate kinase 3, chloroplastic-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q7X7H9|SK3_ORYSJ1.00E-117Shikimate kinase 3, chloroplastic (Precursor)
trEMBLtr|M0TIH9|M0TIH9_MUSAM2.00E-124Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P17920_001}
TAIRAT2G219406.00E-83shikimate kinase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000178531640551895-
Transcript Sequence

Network for GWHGAAEX005857

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01202.21SKI1081718.60E-19
PF01202.21SKI1832851.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00891aroK, aroL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.260
SRR2545915Juvenile tuber13.850
SRP108465SRR5643513five period of Gastrodia elata32.790
SRR5643514five period of Gastrodia elata20.190
SRR5643515five period of Gastrodia elata50.640
SRR5643524five period of Gastrodia elata32.010
SRR5643525five period of Gastrodia elata53.010
SRR5643528five period of Gastrodia elata99.210
SRR5643658five period of Gastrodia elata71.960
SRR5643659five period of Gastrodia elata22.500
SRR5643660five period of Gastrodia elata15.340
SRR5643661five period of Gastrodia elata21.480
SRR5643662five period of Gastrodia elata31.040
SRR5643663five period of Gastrodia elata33.800
SRR5643664five period of Gastrodia elata11.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.330
SRR6049655Rhizomagastrodiae_C368-T10_good_18.640
SRR6049656Rhizomagastrodiae_C368-T07_good_111.390
SRR6049657Rhizomagastrodiae_C368-T07_good_19.220
SRR6049658Rhizomagastrodiae_C368-T04_good_110.150
SRR6049659Rhizomagastrodiae_C368-T04_good_18.250
SRR6049660Rhizomagastrodiae_C368-T01_good_18.530
SRR6049661Rhizomagastrodiae_C368-T04_good_110.250
SRR6049662Rhizomagastrodiae_C368-T01_good_115.500
SRR6049663Rhizomagastrodiae_C368-T01_good_110.530
SRR6049664Rhizomagastrodiae_C368-T10_good_117.050
SRR6049665Rhizomagastrodiae_C368-T10_good_117.050
SRP279888GastroGastrodia elata tuber 17.85
JuvenJuvenile tuber7.84
Mother_GastroMother tuber of Gastrodia elata 44.20
Mother_JuvenMother tuber of Juvenile 32.64