Detail information of GWHGAAEX005858/evm.TU.scaffold_172.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16772.00E-08CCCH-type Zn-finger protein
nrgi|672182647|ref|XP_008811573.1|1.86E-29PREDICTED: zinc finger CCCH domain-containing protein 9-like [Phoenix dactylifera]
Swissprottr|Q6L5G1|C3H39_ORYSJ6.00E-07Zinc finger CCCH domain-containing protein 39
trEMBLtr|A0A0A0K529|A0A0A0K529_CUCSA4.00E-17Uncharacterized protein {ECO:0000313|EMBL:KGN44014.1}
TAIRSPBC1718.07C2.00E-08Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000178759512761612-
Transcript Sequence

Network for GWHGAAEX005858

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH1892132.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
K18753ZFP36L Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.160
SRR2545915Juvenile tuber0.180
SRP108465SRR5643513five period of Gastrodia elata0.080
SRR5643514five period of Gastrodia elata0.130
SRR5643515five period of Gastrodia elata0.240
SRR5643524five period of Gastrodia elata0.140
SRR5643525five period of Gastrodia elata0.670
SRR5643528five period of Gastrodia elata0.340
SRR5643658five period of Gastrodia elata0.130
SRR5643659five period of Gastrodia elata0.410
SRR5643660five period of Gastrodia elata0.230
SRR5643661five period of Gastrodia elata0.230
SRR5643662five period of Gastrodia elata0.680
SRR5643663five period of Gastrodia elata0.460
SRR5643664five period of Gastrodia elata0.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.740
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.070
SRR6049659Rhizomagastrodiae_C368-T04_good_10.090
SRR6049660Rhizomagastrodiae_C368-T01_good_10.130
SRR6049661Rhizomagastrodiae_C368-T04_good_10.160
SRR6049662Rhizomagastrodiae_C368-T01_good_10.170
SRR6049663Rhizomagastrodiae_C368-T01_good_10.230
SRR6049664Rhizomagastrodiae_C368-T10_good_10.190
SRR6049665Rhizomagastrodiae_C368-T10_good_10.190
SRP279888GastroGastrodia elata tuber 0.42
JuvenJuvenile tuber0.55
Mother_GastroMother tuber of Gastrodia elata 0.54
Mother_JuvenMother tuber of Juvenile 0.62