Gene detail

Detail information of GWHGAAEX005859/evm.TU.scaffold_172.17

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2864	1.00E-123	Nuclear division RFT1 protein
nr	gi\|743778334\|ref\|XP_010919626.1\|	0	PREDICTED: protein RFT1 homolog isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0RPP2\|M0RPP2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P05620_001}
TAIR	AT5G07630	1.00E-123	lipid transporters

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000178	819013	875377	+

Transcript Sequence
>GWHTAAEX005859 ATGTGGGTACTTCGCCCGACAATCGATAGGGTTCTTCGCGTTCGTCCTCCAGAAGCTCGCCTCCGCCAGACGCAGCGCCGGTGTTCCGCCTTCGCTTCGCCTCGCCGATTTCGTCAGACGCTGCTCCGCCTTTGCTTTGCCTTGCCTCGACCAATTTCATCAGACTCAGCTCCGCCAGACGCAGCGCCTCACTTCACCTCCCGTTCCCATTCACTTCCTTTTTATGATATTGGTGACATACTTGAGATGATAAATGAAAAAGATGGAACTCTAATGTATCAGGGCAACCCTGTTGACATTAGTTTGGGTACAACATTTCAATACCTCATGGGTGCGTCATCAGCTTGCTCGGCATGCCTTCAACTTTATGCAGTTAAATTTCATCTCTTAACTACATCTATCTTGTTTCTAAGTCGAGAGGGCTTTCGCCGTGCTTGCATGCGGATAGATATACAATGTGACAAGAGAATGGATGAAAATGCAGCAAAGTTACTGAAAATAGCTTGGTTGACCATTCCCTTTGGCATTTTTTTTTCCTCCACTCTATGTTACCTTTTCTTCTTGTTTGAGAATGTTTCAATTCAAAATGCTATTTCTGATACCAATGTCCAAGCCATATTGATAAATGGATTTGCTTGCATATTGGAGCTATTGGGAGAACCATTGTTTATACTTTCACAAAATCTGCTTCTTCTGAAACTAAGGTTGATTATTGAAACAGTTGCAACTATTGTTCGTTGTATGACAACCTGCGCTCTAATGCTCCAAAGCACATACATGGACATGGCGATCATATTTGCTATATCGCAGGCTTCATATGGTGCTTGCATAGCTTTAGGATATTGGACTTACTTTCTTTCCAGTCGGATCATAAGAAGCAGTTATCTCTTCCCTTTTTGGTTACGGAACAATATTGAAGGTGATAAGCAGTTTCGTTACATGTGCTTTTTACTCACTGGTCAAGCATCATGGAAATTGCTACTTCAGGAAGGAGAAAAGATGGTTCTTCTATGGTTTGATTCATCTTACAATCAAGCCATATATGGTCTAGTTGACAAATTAGGAGGTTTAGTTGCGAGATTGGTTTTTAATCCTTTTGAAGAAAGCTCCTATGCTACTTTTGCAAAAGTAGCATCAGGAAACTCCCCTCAGCAGATCATGTTGTTAGGGAGTTCACTCATGGAAGCATTGAAGCTAGTATCATTGATAGGTCTTGCGGCCATTGCATTTGGTCCAAGTTACTCGTATTGTCTTATTAGACTACTCTATGGGAAGAAATGGAGTGATGGGCAGGCTTCAACAGTGCTAAGTTACTATTGTTTCTATATCATATGCTTAGCTTTGAATGGCACATCCGAAGCTTTCTTGCATGCTGTTGCCAATGAAAGCCAATTAATACAGTCGAATTTCTCATTGTTCCTTATTTCTGGAATTTATATTTTTCTAAATGTTATTTTGGTCCGGTCTGCTGGAGCTTTTGGCTTGATTACAGCGAATTCTTTCAATATGATTTTGAGGATTACGTACTCTGCATTATTTATAAGGCGTTATTTCAAGGGATCTTTTTCATTTCTTCAGTGCTTGCCATCAGGCTGGATAATTTTTCTTTTTTCTAGTGCAATAACGCTTGCATCTGAGAGACTGTTTCTGGATAGGGAAAATTTCTGGCATTCTCTCCCGATTCATCTATCTGTTGGCATTCTGTGCTTCGGCATCTCCGCCTTGGTGATGTATCGTCAGGAAAGACATTTGATCAGCAAAATTATCCACGTCCGGGCCCATAGGGACTGATGTTCTTGGCCTATTTGTTCTTGCTCAATAAGGACTGCTCCCAATGAATGTGAAGCCATGAACGCACTGTGCCAAACCGTATGGCTTAAGTAGCAACACTTGGGAACGCTGTCCAGAGCAATCTCTTGCCAATATCTGGAGGCATCGCCCCCCCATTCAAACATAGGACAGCGAGCGAGAGCATCAACAATATCCAAATCTACCAAGCTACTATCGGTGGAATGTATATTTCAAACATAACTATAAAATTGCATAAATAAATGCATAGTTTATGGAACACAATCCAAATTGGCCTAACATGTCGAACTCCATGGCAAAAATAGGAATCCATCTGAGCAAGTGCATAGGATAATCCACGACCAACATAACGGCTTGTGAGTATCAATGCTTTATTGGTAAAGGGAAAAATGCCTTTAGTCAATCAAATCAGTGTACAATGAATCAAATAAGAGTATTGATGTACTTATATATTAATATATATCAAAAATATATA

Network for GWHGAAEX005859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04506.12	Rft-1	123	589	1.40E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006869	Biological Process	lipid transport
GO:0005319	Molecular Function	lipid transporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.370
SRP064423	SRR2545915	Juvenile tuber	18.220
SRP108465	SRR5643513	five period of Gastrodia elata	10.670
	SRR5643514	five period of Gastrodia elata	12.350
	SRR5643515	five period of Gastrodia elata	11.090
	SRR5643524	five period of Gastrodia elata	12.070
	SRR5643525	five period of Gastrodia elata	11.220
	SRR5643528	five period of Gastrodia elata	10.870
	SRR5643658	five period of Gastrodia elata	11.110
	SRR5643659	five period of Gastrodia elata	11.620
	SRR5643660	five period of Gastrodia elata	10.730
	SRR5643661	five period of Gastrodia elata	9.900
	SRR5643662	five period of Gastrodia elata	9.180
	SRR5643663	five period of Gastrodia elata	11.350
	SRR5643664	five period of Gastrodia elata	8.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.510
SRP279888	Gastro	Gastrodia elata tuber	8.67
	Juven	Juvenile tuber	11.29
	Mother_Gastro	Mother tuber of Gastrodia elata	9.62
	Mother_Juven	Mother tuber of Juvenile	12.35