Detail information of GWHGAAEX005862/evm.TU.scaffold_172.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 4.00E-81 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|672115408|ref|XP_008780741.1| | 6.03E-116 | PREDICTED: homeobox-leucine zipper protein HOX21-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|A2XD08|HOX21_ORYSI | 2.00E-87 | Homeobox-leucine zipper protein HOX21 |
| trEMBL | tr|D6MKG5|D6MKG5_9ASPA | 2.00E-105 | Transcription factor {ECO:0000313|EMBL:ADG58012.1} (Fragment) |
| TAIR | AT1G69780 | 4.00E-81 | Homeobox-leucine zipper protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000178 | 992976 | 994825 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005862
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 80 | 133 | 2.60E-15 |
| PF02183.17 | HALZ | 135 | 175 | 3.40E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.640 |
| SRR2545915 | Juvenile tuber | 59.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.920 |
| SRR5643514 | five period of Gastrodia elata | 48.680 | |
| SRR5643515 | five period of Gastrodia elata | 33.720 | |
| SRR5643524 | five period of Gastrodia elata | 37.480 | |
| SRR5643525 | five period of Gastrodia elata | 80.670 | |
| SRR5643528 | five period of Gastrodia elata | 211.750 | |
| SRR5643658 | five period of Gastrodia elata | 112.950 | |
| SRR5643659 | five period of Gastrodia elata | 53.500 | |
| SRR5643660 | five period of Gastrodia elata | 53.870 | |
| SRR5643661 | five period of Gastrodia elata | 41.200 | |
| SRR5643662 | five period of Gastrodia elata | 69.740 | |
| SRR5643663 | five period of Gastrodia elata | 43.840 | |
| SRR5643664 | five period of Gastrodia elata | 51.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 69.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 67.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 76.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 74.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 61.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 75.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.29 |
| Juven | Juvenile tuber | 18.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.21 | |
| Mother_Juven | Mother tuber of Juvenile | 12.36 |