Detail information of GWHGAAEX005864/evm.TU.scaffold_172.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|156936976|ref|YP_001434772.1| | 2.00E-35 | 30S ribosomal protein S4 [Ignicoccus hospitalis KIN4/I] |
| KOG | KOG3301 | 2.00E-123 | Ribosomal protein S4 |
| nr | gi|695006272|ref|XP_009389620.1| | 1.15E-136 | PREDICTED: 40S ribosomal protein S9-2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FLF0|RS92_ARATH | 5.00E-124 | 40S ribosomal protein S9-2 |
| trEMBL | tr|M0TP59|M0TP59_MUSAM | 4.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P10060_001} |
| TAIR | AT5G39850 | 2.00E-123 | Ribosomal protein S4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000178 | 1003187 | 1008258 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005864
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00163.18 | Ribosomal_S4 | 12 | 64 | 2.10E-07 |
| PF01479.24 | S4 | 109 | 152 | 2.80E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02997 | RP-S9e, RPS9 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0019843 | Molecular Function | rRNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 230.140 |
| SRR2545915 | Juvenile tuber | 271.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 352.920 |
| SRR5643514 | five period of Gastrodia elata | 356.300 | |
| SRR5643515 | five period of Gastrodia elata | 325.240 | |
| SRR5643524 | five period of Gastrodia elata | 355.410 | |
| SRR5643525 | five period of Gastrodia elata | 218.590 | |
| SRR5643528 | five period of Gastrodia elata | 252.450 | |
| SRR5643658 | five period of Gastrodia elata | 183.690 | |
| SRR5643659 | five period of Gastrodia elata | 381.360 | |
| SRR5643660 | five period of Gastrodia elata | 369.590 | |
| SRR5643661 | five period of Gastrodia elata | 435.680 | |
| SRR5643662 | five period of Gastrodia elata | 367.730 | |
| SRR5643663 | five period of Gastrodia elata | 343.190 | |
| SRR5643664 | five period of Gastrodia elata | 332.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 284.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 347.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 348.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 255.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 252.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 209.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 290.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 276.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 438.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 375.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 423.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 423.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 311.70 |
| Juven | Juvenile tuber | 221.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 120.67 | |
| Mother_Juven | Mother tuber of Juvenile | 127.99 |