Gene detail

Detail information of GWHGAAEX005865/evm.TU.scaffold_172.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158522225\|ref\|YP_001530095.1\|	9.00E-151	heat shock protein 90 [Desulfococcus oleovorans Hxd3]
KOG	KOG0019	0	Molecular chaperone (HSP90 family)
nr	gi\|672161587\|ref\|XP_008800616.1\|	0	PREDICTED: heat shock protein 83 [Phoenix dactylifera]
Swissprot	tr\|Q9STX5\|ENPL_ARATH	0	Endoplasmin homolog (Precursor)
trEMBL	tr\|M0RLR7\|M0RLR7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P26930_001}
TAIR	AT3G07770	0	HEAT SHOCK PROTEIN 89.1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000178	1031005	1041858	-

Transcript Sequence
>GWHTAAEX005865 CTGAGTTCCAGAAGCTTCTACGCATCGGAGGTGAAGCCCCTTCAGTCCGCACTTAAAACCCCATTAAACCCTAATTCCGAAGCTACGAAAGGCCCATTCTGGAGGCGAGCAGGAAGGGAGAATCTCGAAGGAAGAATGCTCTGCGCATCCCGGCGATCGCTTTCAGCCGCGGCGCGCTCTTTGAGCTGCGCCCCTCAATCCTTGTTGGCTTTCTCCGTCTCGCAACGCCGTACATCGCTCGCATCCTCTCAGACCTCGGTTTTGAAGCATGAATCTGAGCATCTCCCAGCCTCTATTCGTTGTTTTTCCATGCTGTCAGCTTCCAAAGCTTCTCTTACTGGAAATTCAGTGTCACTGAATAGCAGTCTAATCAGCAAGCACCATGAGTCAACTGCTGCTGCAGTTGATTCGTCTTCACCTTCTTCTGAGAAATTTGAGTACCAGGCTGAGGTTAGTCGCCTCATGGATCTTATAGTACACAGCTTATACAGCAACAAAGATGTTTTTCTCCGGGAGTTGATTAGTAATGCAAGTGATGCTTTGGACAAACTGCGGTATTTGAGTGTCACTCAGCCTGAGCTCTTGAAAGGTGCTGTTGATCTTGATATTCGCATTCAAACTGACAAGGAAAATGGAATAATAACTCTAACTGATTCTGGAATTGGTATGACGAGACAAGAACTTGTTGACTGTCTTGGAACTATTGCTCAGAGTGGAACAGCAAAGTTTTTCCAGGCATTGAAGGAAAGCAAGGAAGCTGGTTCTGACAACAATTTAATTGGCCAATTTGGAGTGGGATTTTATTCAGCATTCCTTGTTGCTGACAAAGTAGTTGTTTCAACAAAGAGTCCTAAATCAGAAAGCCAGTTTGTTTGGGAAGGAGAAGCAAATGCTAATTCTTACACAATAAGGGAGGAAACAAATCAGGATAACCTCATCCCAAGAGGAACTCGAGTTACTTTGTTTCTTAAGCGTGATGACAAGGGCTTTGCTCATCCTGAGAAAATTGAAAATTTGATCAAGAATTATTCTCAGTTTGTTTCCTTTCCAATTTTCACTTGGAAAGAGAAAGGCTTTACTAAAGAGGTTGAGGTTGATGAGGAGACAACTGAAGCACAAAAGGATGCAGAAGGGGATGGCCCTGTTGAGAAGAAAAAGAAGACTAAAAAGGTAATTGAGAAATACTGGGATTGGGAGCTAATTAATGAGACACAGCCTATATGGCTTCGAAATCCTAAAGATGTTACAACGGACGAGTACAATGAATTCTACAAAAAGACATTCGATGAATACTTGGAACCATTAGCTTCTTCACATTTTACAACAGAGGGAGAAGTAGAATTCAGGTCCGTTTTGTTTGTGCCTGCTGTGAAAAAAGAAGACATGTTGAATACAAAAACAAAGAACATAAGGCTCTACGTTAAACGTGTATTCATATCAGACGACTTTGATGGGGAATTGTTTCCAAGATATTTGAGCTTTGTGAAAGGAGTCGTGGATTCAAATGACCTCCCTTTAAATGTCTCACGTGAGATCCTTCAAGAAAGCCGCATTGTGCGGATCATGAGGAAACGGCTAGTTCGCAAGGCGTTCGATATGATTCTGGGAATATCACTTGGTGAGAACAAAGATGATTATGATAAATTTTGGGATAATTTCGGCAAATTTTTGAAATTGGGATGCATAGAGGATCATTCAAATCACAAGCGCATTGCACCGCTGCTTAGATTTTTCTCATCTCATAGTGAGGATGAACTGATCAGCTTAGACGAATATGTGGAGAGCATGAAGCAAGAACAGAAAGACATCTACTACATTGCCTCAGACAGCTTAACAAGTGCAAAAAATGCTCCTTTCCTAGAGAAGCTGTCTCAGAAGGATTTTGAAGTTTTATTTTTAGTTGATCCCATGGATGAGCTCGCTATCCAGAACCTTAAATCCTTTAAGGAAAAGAACTTTGTTGATATTAGCAAGGAGGATTTAGATCTTGGCGACAAGGATGAGGAGAAGGAGAAGGAAATCAAGCAAGAATTTGTTCATGCCTGTGATTGGATAAAGAAGAGATTGGGTGAAAAGGTTGCGAGCGTCCAGATTTCAAACCGCCTTAGTTCTTCTCCGTGCGTGCTTGTTAGTGGGAAATTTGGTTGGTCTGCCAACATGGAAAGGTTGATGAAGGCACAGACGCTCGGAGATACTTCTAGCCTCGACTTCATGCGCTCTAGGAGGGTTTTCGAAATTAACCCGGAGCATCCCATCATAAAAAATTTGAAGGCTGCCAGCAAGAGTTGCCCGGATAATCAGGACGCTCTCAGGGCGATTGATCTTCTCTACGACACCGCTCTGATCTCCAGTGGTTTCACTCCTGATAACCCGGGGGAGCTGGGAGGAAAGATCTACGATATGATGGGACTTGCTATAGAAGGAAGATGGATGGCCGAAACTTCTTCTCCTAGCAGCCAATCCGCTCATCTTCAAAACGCTGAGCTGTTGGAAGCTGAAATCGTTGGTCATCAGGCTGAAACAGCTGAACCCACTGGAGGCCGGACTTAAAAGTGAAGTCTTTCCTTATGTCTACTAAATGAAATCTTTATTGTTAGAATGGCATTGCTATATTACATGGAGGTCTTTATAGTGTGTGGTTTTTTCTCTTTTGGAGGAATCAATTTTTGGGATGCATTAGAGATGGAAATAGGATTGCGTGCCGCGGTGTTATTTACTTTTTTTTTTTTTTTTCGAGGATTTTGTGACTAAGATTTGTGCTTATGGCGTAAAATTTCAATTCATAACACACCATTATCAGTATCAAGCCTTAGTCAACTAAAATGATTTTCTCTAGTCTATGGAGGCCAAGTCCTCCTTATACCCTATGATGACTCTTCTTGAGCCATTCTTCAACCTCTTAGGGCATGAATTGGTTTTTTCTCTAGAAAATTTTATGCTTGGTCGACTTCATTGAGTGATCCATTACACTCGATTGGTAACTGCATTTCAAAAGGGCTTGCTGGTAGATAATGCTGGTAAGTAAGTCTCAAATGGACTAATCAGAGCGGATTGATGGATGATTTGATTGAATGCAACATGGATATGTAGAACTATTGTACAAGTTGCAAGTCCTTGGTTATACTTTTAATATTCATTATAGATTCTTTCAAGGCCTACTTTGTAATTGAC

Network for GWHGAAEX005865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02518.25	HATPase_c	121	280	1.40E-11
PF00183.17	HSP90	285	770	6.30E-187

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09487	HSP90B, TRA1	Protein processing in endoplasmic reticulum	map04141
		PI3K-Akt signaling pathway	map04151
		IL-17 signaling pathway	map04657
		Estrogen signaling pathway	map04915
		Thyroid hormone synthesis	map04918
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006457	Biological Process	protein folding
GO:0005524	Molecular Function	ATP binding
GO:0051082	Molecular Function	unfolded protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	118.160
SRP064423	SRR2545915	Juvenile tuber	129.640
SRP108465	SRR5643513	five period of Gastrodia elata	56.820
	SRR5643514	five period of Gastrodia elata	55.520
	SRR5643515	five period of Gastrodia elata	45.620
	SRR5643524	five period of Gastrodia elata	45.690
	SRR5643525	five period of Gastrodia elata	33.220
	SRR5643528	five period of Gastrodia elata	34.000
	SRR5643658	five period of Gastrodia elata	14.140
	SRR5643659	five period of Gastrodia elata	95.950
	SRR5643660	five period of Gastrodia elata	110.350
	SRR5643661	five period of Gastrodia elata	89.360
	SRR5643662	five period of Gastrodia elata	86.790
	SRR5643663	five period of Gastrodia elata	88.740
	SRR5643664	five period of Gastrodia elata	85.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	83.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	63.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	86.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	79.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	67.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	86.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	75.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	123.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	104.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	96.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	96.510
SRP279888	Gastro	Gastrodia elata tuber	112.63
	Juven	Juvenile tuber	134.70
	Mother_Gastro	Mother tuber of Gastrodia elata	23.52
	Mother_Juven	Mother tuber of Juvenile	48.59