Detail information of GWHGAAEX005868/evm.TU.scaffold_172.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|685306891|ref|XP_009144165.1|6.37E-42PREDICTED: uncharacterized protein LOC103867830 [Brassica rapa]
trEMBLtr|M4CMU9|M4CMU9_BRARP2.00E-42Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra005537.1-P}
TAIRAT2G329801.00E-42Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017811795131199357+
Transcript Sequence

Network for GWHGAAEX005868

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15003.5HAUS2531201.40E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0031023Biological Processmicrotubule organizing center organization
GO:0051225Biological Processspindle assembly

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.370
SRR2545915Juvenile tuber23.910
SRP108465SRR5643513five period of Gastrodia elata21.160
SRR5643514five period of Gastrodia elata20.790
SRR5643515five period of Gastrodia elata16.800
SRR5643524five period of Gastrodia elata19.550
SRR5643525five period of Gastrodia elata21.540
SRR5643528five period of Gastrodia elata23.320
SRR5643658five period of Gastrodia elata25.780
SRR5643659five period of Gastrodia elata13.850
SRR5643660five period of Gastrodia elata15.110
SRR5643661five period of Gastrodia elata13.220
SRR5643662five period of Gastrodia elata14.170
SRR5643663five period of Gastrodia elata19.260
SRR5643664five period of Gastrodia elata16.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.810
SRR6049655Rhizomagastrodiae_C368-T10_good_118.810
SRR6049656Rhizomagastrodiae_C368-T07_good_122.860
SRR6049657Rhizomagastrodiae_C368-T07_good_119.810
SRR6049658Rhizomagastrodiae_C368-T04_good_113.780
SRR6049659Rhizomagastrodiae_C368-T04_good_114.240
SRR6049660Rhizomagastrodiae_C368-T01_good_118.310
SRR6049661Rhizomagastrodiae_C368-T04_good_112.270
SRR6049662Rhizomagastrodiae_C368-T01_good_119.850
SRR6049663Rhizomagastrodiae_C368-T01_good_121.030
SRR6049664Rhizomagastrodiae_C368-T10_good_125.810
SRR6049665Rhizomagastrodiae_C368-T10_good_125.810
SRP279888GastroGastrodia elata tuber 8.69
JuvenJuvenile tuber5.98
Mother_GastroMother tuber of Gastrodia elata 6.35
Mother_JuvenMother tuber of Juvenile 5.31