Detail information of GWHGAAEX005871/evm.TU.scaffold_172.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0810 | 6.00E-95 | SNARE protein Syntaxin 1 and related proteins |
| nr | gi|672128573|ref|XP_008787779.1| | 2.05E-122 | PREDICTED: syntaxin-121-like [Phoenix dactylifera] |
| Swissprot | tr|Q9ZSD4|SY121_ARATH | 2.00E-95 | Syntaxin-121 |
| trEMBL | tr|M0TM54|M0TM54_MUSAM | 2.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03020_001} |
| TAIR | AT3G11820 | 6.00E-95 | syntaxin of plants 121 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000178 | 1395548 | 1396677 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005871
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00804.24 | Syntaxin | 41 | 246 | 7.10E-56 |
| PF05739.18 | SNARE | 248 | 299 | 6.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08486 | STX1B_2_3 | SNARE interactions in vesicular transport | map04130 |
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.710 |
| SRR2545915 | Juvenile tuber | 19.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 127.610 |
| SRR5643514 | five period of Gastrodia elata | 69.710 | |
| SRR5643515 | five period of Gastrodia elata | 128.040 | |
| SRR5643524 | five period of Gastrodia elata | 64.300 | |
| SRR5643525 | five period of Gastrodia elata | 229.850 | |
| SRR5643528 | five period of Gastrodia elata | 186.090 | |
| SRR5643658 | five period of Gastrodia elata | 120.550 | |
| SRR5643659 | five period of Gastrodia elata | 58.820 | |
| SRR5643660 | five period of Gastrodia elata | 43.070 | |
| SRR5643661 | five period of Gastrodia elata | 61.150 | |
| SRR5643662 | five period of Gastrodia elata | 133.560 | |
| SRR5643663 | five period of Gastrodia elata | 67.340 | |
| SRR5643664 | five period of Gastrodia elata | 353.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 262.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 161.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 166.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 205.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 244.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 303.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 323.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 205.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 234.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 211.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 211.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.31 |
| Juven | Juvenile tuber | 50.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 280.68 | |
| Mother_Juven | Mother tuber of Juvenile | 149.93 |