Gene detail

Detail information of GWHGAAEX005874/evm.TU.scaffold_172.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434405931\|ref\|YP_007148816.1\|	4.00E-14	Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417]
KOG	KOG0531	1.00E-132	Protein phosphatase 1, regulatory subunit, and related proteins
nr	gi\|743773023\|ref\|XP_010916839.1\|	0	PREDICTED: uncharacterized protein LOC105041598 [Elaeis guineensis]
Swissprot	tr\|F4IIU4\|AIR9_ARATH	8.00E-10	187-kDa microtubule-associated protein AIR9
trEMBL	tr\|M0TGR0\|M0TGR0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P11720_001}
TAIR	AT1G78230	1.00E-132	Outer arm dynein light chain 1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000178	1471468	1477074	-

Transcript Sequence
>GWHTAAEX005874 ATGGCAATATTTTCTTGTTTGGCTGTGTTTTTGGTTGGAAAGAAGAAGAAATCTAAGATATCACTCGAAGATGTTGATGATAGTAAGAGGCTCCTCAATGATATCGAACTTCTTGTTAAACCGAGCAATCTGGCTAGTTCTTCTGTTCATAATGCAGTGCAGGATTCTCATTTTACATTCCCAAAGCCATCTGTTATTTCTAAGGTTCGGAGTAGTGATAGCTTGGCTAGAGTTGAGTTTGCTATTGGAGAAACAGCATATGAGGGGGGTGATGAGCATGATGAGATTCAATCAATGAAGAGAGAATTTTCTGACTTTGATCTCCAAGACAAAAGAGAACTTGCCTCTCATGGATCAAACACTGATTTAAACAATTTTGGTTTTGTGAACAAGGTGGAGACATATGATGGGATCAATAATGAAATAGCACTTACTAATGGGCATGTGAGTGATCCTGGTTTGAAACAGTCATTTGTTATGGGATCCCCCGTTCTTAAACGCTCTTGTTCTAATATTGAGACTAAAAGAGCTACTGACTCATTTAACTCAGTGAAGAGGTTCAATTCTTACATCAACTTCCAAAACTTGGTAGCAATGGGCAGAGAAGAAATCAGTTATGAGGTATATAGCAGTCCATTATCTGTAAAAACTTCTTGCAGTGCTGATCATGTGATGCTGAAAAAGCGGTCTTCATGTCAGGTGCTCCCTTCTAGAAGCAGGAAAATCTGGTGGAAGCTCTTTTTATGGAGTCACAGGAATCTCCATAGATCTGGTGCTCCTAAACAAGTAACTCCAGACTTGGGTGACGCAAAACAAAAGGTGGGGTACTCATCAGATACACATGAACCTGGTCGAAAGCATGAAAAGATGAAGAACAAGCTAATAGGGAACCAATGGGTTGCATTTTCCTTGGAATCCTCCCCTCGAGATAGAGTTAATGCGTGGATTAATAGCCTCGGAGATTGCACATTATCTGATGAAGAATATCATGATGAAAAAAGAGTTGAAGGACCTGATGGTCCTTTTCTTTTAGAGATTGGAGAATCTTCTGGGAAGAATCATTACCACACTAGTCGACAGGCAGCTGAGGAGGTCCTGTGGGCTAACAATATTATTCAGTCCTTAAATTCATTCTCTTCAGTAGCACATATATCTAACATGGGCCTTAAAATTATTCCTTCCATCTCAGCTTTTGGAAGTCTTAGATCCATCAATCTCTCTGGAAATTTCATATCTCACATAACTCCTGGTTCTCTTCCAAAGAACCTTCACATTCTTGACTTATCTCGGAACAAGATATCGATTATTGAAGGCCTAAGAGACCTCACAAAGCTGAGGGTTCTCAACCTAAGCTACAATCGCATTTCAAGAATTGGTCACGGAATATCGAACTGCACACTCATCAAAGAGCTGTACCTCGCCGGCAACAAGATTAGTGATGTGGAGGGTCTGCACCGTCTTCTAAAGCTCACAGTTCTCGACCTCAGCTTCAATAAGATAACCACGAGCAAAGCTTTGGGTCAGGTGGTTGCGAACTACAACTCTCTCTCGGCGCTAAATCTTATTGGGAATCCGATACAGAGCTGCATTGGGGATGAATTGATCCGGAAGACGGTATTGAGCCTCCTCCCACGCATCTCTTACTTCAACAAGCAGCAGATCAAGCAGCATAGAGTTAGGGAGGTCTCAGCCAGCACAAAGACAGCCCTCGGAGATGCTGGTTGGGGTGCCCAAAGGAGGCCGGTGAGACGGCTTGGGCAAGTTACGAGATCTTCTTTGGATAATAAGAAGGGGGGAAAGTGGAAGGGGAAGCATCACCATTCTTCCTCAGCTTCACGCAAGTGA

Network for GWHGAAEX005874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	400	455	2.60E-10
PF13516.5	LRR_6	489	502	0.27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	140.370
SRP064423	SRR2545915	Juvenile tuber	96.690
SRP108465	SRR5643513	five period of Gastrodia elata	43.370
	SRR5643514	five period of Gastrodia elata	47.990
	SRR5643515	five period of Gastrodia elata	45.260
	SRR5643524	five period of Gastrodia elata	43.960
	SRR5643525	five period of Gastrodia elata	83.600
	SRR5643528	five period of Gastrodia elata	64.850
	SRR5643658	five period of Gastrodia elata	65.890
	SRR5643659	five period of Gastrodia elata	33.520
	SRR5643660	five period of Gastrodia elata	37.970
	SRR5643661	five period of Gastrodia elata	28.070
	SRR5643662	five period of Gastrodia elata	48.830
	SRR5643663	five period of Gastrodia elata	48.020
	SRR5643664	five period of Gastrodia elata	42.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	76.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.540
SRP279888	Gastro	Gastrodia elata tuber	87.83
	Juven	Juvenile tuber	42.90
	Mother_Gastro	Mother tuber of Gastrodia elata	35.40
	Mother_Juven	Mother tuber of Juvenile	33.97