Detail information of GWHGAAEX005877/evm.TU.scaffold_172.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 1.00E-22 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|115445577|ref|NP_001046568.1| | 0 | Os02g0283800 [Oryza sativa Japonica Group] |
| Swissprot | tr|C0LGT1|Y5129_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (Precursor) |
| trEMBL | tr|Q6K4T4|Q6K4T4_ORYSJ | 0 | Putative SERK2 protein {ECO:0000313|EMBL:BAD22198.1} |
| TAIR | AT5G10290 | 0 | leucine-rich repeat transmembrane protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000178 | 1617009 | 1645248 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005877
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 18 | 57 | 2.10E-09 |
| PF13855.5 | LRR_8 | 84 | 144 | 2.90E-10 |
| PF00069.24 | Pkinase | 281 | 550 | 2.50E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.350 |
| SRR2545915 | Juvenile tuber | 27.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.220 |
| SRR5643514 | five period of Gastrodia elata | 25.760 | |
| SRR5643515 | five period of Gastrodia elata | 22.580 | |
| SRR5643524 | five period of Gastrodia elata | 18.280 | |
| SRR5643525 | five period of Gastrodia elata | 42.600 | |
| SRR5643528 | five period of Gastrodia elata | 19.060 | |
| SRR5643658 | five period of Gastrodia elata | 39.760 | |
| SRR5643659 | five period of Gastrodia elata | 21.630 | |
| SRR5643660 | five period of Gastrodia elata | 21.390 | |
| SRR5643661 | five period of Gastrodia elata | 15.740 | |
| SRR5643662 | five period of Gastrodia elata | 26.290 | |
| SRR5643663 | five period of Gastrodia elata | 23.710 | |
| SRR5643664 | five period of Gastrodia elata | 28.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.19 |
| Juven | Juvenile tuber | 29.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.32 | |
| Mother_Juven | Mother tuber of Juvenile | 9.61 |