Gene detail

Detail information of GWHGAAEX005879/evm.TU.scaffold_172.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108762272\|ref\|YP_629357.1\|	4.00E-113	ABC transporter permease [Myxococcus xanthus DK 1622]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|695053647\|ref\|XP_009414924.1\|	0	PREDICTED: ABC transporter B family member 11-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M1Q9\|AB21B_ARATH	0	ABC transporter B family member 21
trEMBL	tr\|A0A061DZI3\|A0A061DZI3_THECC	0	ATP binding cassette subfamily B4 isoform 1 {ECO:0000313\|EMBL:EOX95438.1}
TAIR	AT3G62150	0	P-glycoprotein 21

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000178	1793902	1804739	-

Transcript Sequence
>GWHTAAEX005879 ATGGATGAAAATAATGATATTGAAAAACACTACAACAAATCGGCAGATTACTCAGTAAAGGGAGAAGAAGATGAAGGAGAAAGAAAGAAGAAGGAATCCATGCGGCAGCAGCAATTCGTGCCTTTCTACAAACTCTTCTCCTTTGCAGACTCCACTGATGTCCTTCTAATGATTCTGGGAACAGCAGGAGCATTGGCAAATGGGGTCACTGTGCCCATCCTCTCTGTCCTTTTAGGGAACTTATCTGATGCTTTTGGAAGAGATGCAGATGTTCATCATGTCATTGATAAGGTTACCAAGGTTTGCCTTCAATATGTCTACTTGTCATTCTGGACAGCAATAGCATCCTTTTTTCAAATAAGTTGCTGGATGATAGCTGGGCAAAGACAAGCATCAAGAATAAGGAGGTTGTATTTGAAAGCTTTGTTAAGCCAAGAGATTGCATTCTTTGATATCGAAGCAAGCATTGGAGAGAGTATAGGCAATATGACAGGAAATACCATCCTCATTCAAGATGCAATAAGTGAAAAGGTTGGTAACATCATTGAATTGATAACTACAGTTTTTGGAGGCTTTATCCTTGCATTCATGAAAGGATGGATTCTCACTCTAGCAACAGTTTCCGTCATTATTCCAATGGGGCTATGCATTTACTTAATGTCAAAATATTCATTTAAGATGGCTATGCAAGGAATAAAGGCTAATGCAGAAGCATCTAATATTATACAACAGACGGTCAGCTCGATAAGAACTGTGGCTTCATTTGCTGGGGAAGAACTATCAGCAAAGAAGTATGAAGTGGCACTTAAAAACGTTTGTAGATCTTGCATACAAGAGGGCCTTTTTGCTGGGATTTTTATTGGTTTTATATCATTATTAACATATAGTTCACTTTCTTTGGGCTTTTGGTATGGAGCAAAGATGATATTCCATAAAGGATACAGTGGTGGAACTGTCATTAGCGTTGTAATTTCCATCATGATGAGTTGCATTTCAATACCTCCGATACCTCCATGCATGGCAGCATTTGCTACCGGGAAAGCTGCTGCACATAAGATTTTTGAGACAATCAACAGAAAGACGAAGATCGATGCGTCTGACACAAATGGAACGATTCTATCCAACATTCATGGAAATATAGAGTTTAAAAATGTTTGTTTTAGCTATCCGTCCAGGCCAGATGAGAAAATTTTTAAAGACTTGTCTTTTGTCATTCAAGGTGGGACAACAGTTGCATTAGTTGGTGGCAGTGGAAGTGGAAAATCAACAGTAATAAGCCTTATAGAAAGGTTCTATGACCCACAGCAAGGTGAAATACTTATTGATGGCATAAACCTCAAACAATTTCAACTTAAATGGCTAAGAGGAAAGATTGGGCATGTGAGCCAAGAGCCTGCTCTTTTCTCATCAAGCATAAGGGATAACATCACCTGTGGGAAGGATAATGCAACAATTGAAGAGATTACAACTGTTGTCAAGCTAGCAAATGCTTCAACTTTTTTGAACAAGTTGCCTCAGGGATTAGATACCATGGTTGGCGAGCGCGGTATTCAACTATCAGGTGGACAAAAGCAAAGGATTGCACTTGCGCGTGCAATTTTGAAGTATCCAAGAATACTCTTACTTGATGAAGCAACTAGTGCACTTGACATAGATTCAGAGAAGATCATTCAAGAAAATCTTGAGAAAGCCATGTTGAATTGCACTACTATCATAGTTGCACATCGTTTGAGCACTGTAAGAAATGCAAGTTCAATTGTAGTTATGCATCAAGGAGCAATTGCTGAAAGAGGTTCTCACTCCGAGCTACTAAAGAATCCAAATGGAGGCTATAGCAAACTCATCCGATCACAAGAAGAACATCAAAATTTACAAAAATCATCTCCTTGTGATAAAAAGGAAGGCAATTTATCCACCACAGTAGCAACTCATTGGAAACAAAAGCATTCTTTTAAACAACAATATATCAGTGAATATTTATCTTTCAAGCAAGATGCTACTATAAAAACTGATAAACCTTCTATGAAATCAAATTCAGTGCCACTTAGTCGTCTTGCCTATCTAAATAAGCAAGAGATGCCACATCTAATGTTTGGTTCAATAGCTGCGATCGCCAGTGGGCTAGTGTTTCCCATCTATGCACTGCTTTTATCAAAAGTTGTAAAGACATTTTATGAGCCGTTGGATAAACTTGAGCACAGAGTTATAATTTGGTCAATAATGTACTTGATACTCGGAGTAGTGTCACTTGTTGCAATTATCATAAGAACATTCTGCTTTTCAGTTGCTGGAGCCAAGCTGATTAAGAGAATTAGATTGATGACATTTGAGAAGGTTGTGAGCATGGAAATATCATGGTTTGATGATAGTACAAATTCTAGTGGAGCAATTAATACAAGGCTATCAACGGACGCAGCTACAATAAAAAATCTTGTCGGAGATAGCCTTGCTATGCTTGTTCAAACTAGTAGCACCTTAATCTCCGGGCTGACAATTGGTTTTATTGCTTGTTGGCAACTAGCACTCCTTGCCTTGGCAATGGTACCTATCGTTATCCTTAATGGACGGATGAAAATGAAGATTTGCAAGGGCTTTATTGTTGAAACAAAGAAGATGTATGAGGAAGCTGGTCTAGTCGCCAATGATGCGTTAGGAAGTATAAGGACAGTGGCTTCACTCTCAGTAGAAGAAAAGGTGTTGGAGCTATATACTAAGAAGTGCAAAGGCCCTGAAATTGCAGGAATTAAGCATGGAGTGGTTAGCGGAATTGCTTATGGGGCTTCCTACCTCATCATTTATTGTGCTTATGCAACAAACTTCTATGTTGGAGGTCTGCTTGTTGGTAAAGGAAAGACAACAATTGAGAAAGTGTTTCAAGCTTTTTTTGCCATATCGATGTCTGCCATTGATATTTCTCGATCTTTCTCCCAAAGGCCCGACTTTGACAAAGCACAATCTGTTACAAATTCCATTTTTGCAATTATTGATCGTAAACCCCCAATAAATTCAAGTGACAACTCTGGTTTAATTTTAGCACCTTTTGAAGGCAATATAGAGTTCAAGAATGTTACTTTCAGATATCCAACAAGGCCAAATGTCGACATTTTTCATAATTTGTGCTTTTATGTTCAATCAGGAAAGACAGTTGCATTGGTAGGGGAGAGCGGAAGTGGAAAGTCAACAATAATAGCTTTGCTGCAAAGATTTTATGACCCAAATTCAGGGAAAATATTGCTAGATGGAACAGAGATAGAAAAGCTGCAGTTGCATTGGTTAAGGCAACAGATGGGATTGGTGAGTCAAGAACCAACATTGTTTAATGATACTATAGAGGCCAACATTGCATATGGTATGCAAGGAAGGGCTACTGAAGCTGAAATTATTGCTGCATCTAAGTCAGCCAATGCCCACACATTTATATCTAACTTGAAACAGGGATACCGAACAGTGGTGGGAGAGCAAGGGGTGAAGCTTTCAGGTGGGCAGAAACAAAGGGTTGCGATTGCGCGAGCAATAGCAAAGCAACCGCAGATTTTGCTTCTGGATGAGGCGACAAGTGCTCTGGATACTGAATCCGAACTGATTGTTCAAGCTGCACTTGACAATGTGATGGTAAATCGAACCACAGTTATCATCGCCCATAGACTTGGCACAATAAAAAATGCAGATCTTATAGTCGTGATGAAAAATGGAGTTATTGTAGAAAGCGGGAAACACGAAGCACTTGTGAACGTTGAGGATGGGGTTTATGCTTCCATGGCAGCCGTTCATTCAAATGTGCGGCTGTAGGCGTTCTTAGTTGGAATTTTGAATCATTGGTCAGATTTTGGGAATTCATGCCGTTGAAAAGGTTGTCTATGTGTAATAAAGAAAGAGACAAGTACTTAGTGGCTGTTTGGTTGAATGTCAGCGGTGTTATTCAGATAACAGATGTTAGTATTATTCAGATGGATGTTATTTGATTGAATATCATCCATATTATATTACACATTAAGTAAGTTTATCTTAAAATATTGAGA

Network for GWHGAAEX005879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	57	328	1.90E-47
PF00005.26	ABC_tran	399	547	1.10E-34
PF00664.22	ABC_membrane	697	967	8.60E-58
PF00005.26	ABC_tran	1037	1186	3.90E-36

Protein Sequence

>GWHPAAEX005879
MDENNDIEKHYNKSADYSVKGEEDEGERKKKESMRQQQFVPFYKLFSFADSTDVLLMILGTAGALANGVTVPILSVLLGNLSDAFGRDADVHHVIDKVTKVCLQYVYLSFWTAIASFFQISCWMIAGQRQASRIRRLYLKALLSQEIAFFDIEASIGESIGNMTGNTILIQDAISEKVGNIIELITTVFGGFILAFMKGWILTLATVSVIIPMGLCIYLMSKYSFKMAMQGIKANAEASNIIQQTVSSIRTVASFAGEELSAKKYEVALKNVCRSCIQEGLFAGIFIGFISLLTYSSLSLGFWYGAKMIFHKGYSGGTVISVVISIMMSCISIPPIPPCMAAFATGKAAAHKIFETINRKTKIDASDTNGTILSNIHGNIEFKNVCFSYPSRPDEKIFKDLSFVIQGGTTVALVGGSGSGKSTVISLIERFYDPQQGEILIDGINLKQFQLKWLRGKIGHVSQEPALFSSSIRDNITCGKDNATIEEITTVVKLANASTFLNKLPQGLDTMVGERGIQLSGGQKQRIALARAILKYPRILLLDEATSALDIDSEKIIQENLEKAMLNCTTIIVAHRLSTVRNASSIVVMHQGAIAERGSHSELLKNPNGGYSKLIRSQEEHQNLQKSSPCDKKEGNLSTTVATHWKQKHSFKQQYISEYLSFKQDATIKTDKPSMKSNSVPLSRLAYLNKQEMPHLMFGSIAAIASGLVFPIYALLLSKVVKTFYEPLDKLEHRVIIWSIMYLILGVVSLVAIIIRTFCFSVAGAKLIKRIRLMTFEKVVSMEISWFDDSTNSSGAINTRLSTDAATIKNLVGDSLAMLVQTSSTLISGLTIGFIACWQLALLALAMVPIVILNGRMKMKICKGFIVETKKMYEEAGLVANDALGSIRTVASLSVEEKVLELYTKKCKGPEIAGIKHGVVSGIAYGASYLIIYCAYATNFYVGGLLVGKGKTTIEKVFQAFFAISMSAIDISRSFSQRPDFDKAQSVTNSIFAIIDRKPPINSSDNSGLILAPFEGNIEFKNVTFRYPTRPNVDIFHNLCFYVQSGKTVALVGESGSGKSTIIALLQRFYDPNSGKILLDGTEIEKLQLHWLRQQMGLVSQEPTLFNDTIEANIAYGMQGRATEAEIIAASKSANAHTFISNLKQGYRTVVGEQGVKLSGGQKQRVAIARAIAKQPQILLLDEATSALDTESELIVQAALDNVMVNRTTVIIAHRLGTIKNADLIVVMKNGVIVESGKHEALVNVEDGVYASMAAVHSNVRL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.240
SRP064423	SRR2545915	Juvenile tuber	0.220
SRP108465	SRR5643513	five period of Gastrodia elata	3.450
	SRR5643514	five period of Gastrodia elata	3.670
	SRR5643515	five period of Gastrodia elata	1.550
	SRR5643524	five period of Gastrodia elata	2.690
	SRR5643525	five period of Gastrodia elata	0.050
	SRR5643528	five period of Gastrodia elata	0.070
	SRR5643658	five period of Gastrodia elata	0.150
	SRR5643659	five period of Gastrodia elata	0.050
	SRR5643660	five period of Gastrodia elata	0.050
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.030
	SRR5643663	five period of Gastrodia elata	0.080
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.370
SRP279888	Gastro	Gastrodia elata tuber	0.08
	Juven	Juvenile tuber	0.30
	Mother_Gastro	Mother tuber of Gastrodia elata	0.25
	Mother_Juven	Mother tuber of Juvenile	0.07