Detail information of GWHGAAEX005881/evm.TU.scaffold_172.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24012.00E-160Predicted MutS-related protein involved in mismatch repair
nrgi|672165151|ref|XP_008802471.1|0PREDICTED: polyadenylate-binding protein-interacting protein 7-like isoform X2 [Phoenix dactylifera]
Swissprottr|O64843|CID7_ARATH7.00E-161Polyadenylate-binding protein-interacting protein 7
trEMBLtr|A0A067KCZ7|A0A067KCZ7_JATCU2.00E-180Uncharacterized protein {ECO:0000313|EMBL:KDP34012.1}
TAIRAT2G262802.00E-160CTC-interacting domain 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017820107442014566+
Transcript Sequence

Network for GWHGAAEX005881

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07145.14PAM223361.30E-05
PF08590.9DUF17713854488.00E-16
PF01713.20Smr4655295.70E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms63.410
SRR2545915Juvenile tuber72.450
SRP108465SRR5643513five period of Gastrodia elata75.370
SRR5643514five period of Gastrodia elata62.000
SRR5643515five period of Gastrodia elata67.140
SRR5643524five period of Gastrodia elata66.540
SRR5643525five period of Gastrodia elata64.320
SRR5643528five period of Gastrodia elata56.130
SRR5643658five period of Gastrodia elata57.670
SRR5643659five period of Gastrodia elata73.980
SRR5643660five period of Gastrodia elata66.500
SRR5643661five period of Gastrodia elata70.340
SRR5643662five period of Gastrodia elata72.880
SRR5643663five period of Gastrodia elata71.770
SRR5643664five period of Gastrodia elata70.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.680
SRR6049655Rhizomagastrodiae_C368-T10_good_163.710
SRR6049656Rhizomagastrodiae_C368-T07_good_179.840
SRR6049657Rhizomagastrodiae_C368-T07_good_169.640
SRR6049658Rhizomagastrodiae_C368-T04_good_174.820
SRR6049659Rhizomagastrodiae_C368-T04_good_177.760
SRR6049660Rhizomagastrodiae_C368-T01_good_170.730
SRR6049661Rhizomagastrodiae_C368-T04_good_174.810
SRR6049662Rhizomagastrodiae_C368-T01_good_177.760
SRR6049663Rhizomagastrodiae_C368-T01_good_177.930
SRR6049664Rhizomagastrodiae_C368-T10_good_185.060
SRR6049665Rhizomagastrodiae_C368-T10_good_185.060
SRP279888GastroGastrodia elata tuber 85.58
JuvenJuvenile tuber60.50
Mother_GastroMother tuber of Gastrodia elata 90.78
Mother_JuvenMother tuber of Juvenile 70.86