Detail information of GWHGAAEX005884/evm.TU.scaffold_173.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16091.00E-25Protein involved in mRNA turnover and stability
nrgi|695062571|ref|XP_009419758.1|8.92E-44PREDICTED: E3 ubiquitin-protein ligase MARCH2-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M0REC2|M0REC2_MUSAM3.00E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P00950_001}
TAIRAT5G058301.00E-25RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000172214214240175-
Transcript Sequence

Network for GWHGAAEX005884

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv671203.20E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.720
SRR2545915Juvenile tuber20.090
SRP108465SRR5643513five period of Gastrodia elata26.260
SRR5643514five period of Gastrodia elata25.020
SRR5643515five period of Gastrodia elata21.230
SRR5643524five period of Gastrodia elata26.430
SRR5643525five period of Gastrodia elata17.310
SRR5643528five period of Gastrodia elata13.600
SRR5643658five period of Gastrodia elata14.410
SRR5643659five period of Gastrodia elata28.270
SRR5643660five period of Gastrodia elata30.370
SRR5643661five period of Gastrodia elata26.470
SRR5643662five period of Gastrodia elata26.580
SRR5643663five period of Gastrodia elata29.030
SRR5643664five period of Gastrodia elata36.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.470
SRR6049655Rhizomagastrodiae_C368-T10_good_19.250
SRR6049656Rhizomagastrodiae_C368-T07_good_117.410
SRR6049657Rhizomagastrodiae_C368-T07_good_119.770
SRR6049658Rhizomagastrodiae_C368-T04_good_118.380
SRR6049659Rhizomagastrodiae_C368-T04_good_116.770
SRR6049660Rhizomagastrodiae_C368-T01_good_121.130
SRR6049661Rhizomagastrodiae_C368-T04_good_117.610
SRR6049662Rhizomagastrodiae_C368-T01_good_116.340
SRR6049663Rhizomagastrodiae_C368-T01_good_117.840
SRR6049664Rhizomagastrodiae_C368-T10_good_117.020
SRR6049665Rhizomagastrodiae_C368-T10_good_117.020
SRP279888GastroGastrodia elata tuber 26.28
JuvenJuvenile tuber43.93
Mother_GastroMother tuber of Gastrodia elata 37.13
Mother_JuvenMother tuber of Juvenile 61.60