Gene detail

Detail information of GWHGAAEX005889/evm.TU.scaffold_173.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2502	2.00E-150	Tub family proteins
nr	gi\|743799853\|ref\|XP_010925627.1\|	8.51E-179	PREDICTED: tubby-like F-box protein 1 [Elaeis guineensis]
Swissprot	tr\|Q93VI8\|TLP7_ARATH	9.00E-159	Tubby-like F-box protein 7
trEMBL	tr\|M0SJG0\|M0SJG0_MUSAM	5.00E-170	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR	AT1G53320_2	2.00E-150	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000172	481718	490008	+

Transcript Sequence
>GWHTAAEX005889 GTAAAACCGTGTTAGCGTGTAATGCTGCCAATTATGAGGGATTTTATAACAAGGGTAAAAATACTAGAGTGCGTTTCTTCTCTTTAGGAGAACGATCCATCAATCTGCGCGCTTCGGGCGACATGCCGAGAAGATTCGCGTTTCTCCGCGATTTCTCCAATGTTTCAATTTCGATCGATCTGTTTGGCGACTCGTGGAGGCGGCGGCGGAATGATGCGGAGGCCGCGCCGGCGAGAGTTGATAGAGGGGAGGTCGAGGCCGACGGATATTCTGGATTGGAGGAAGAAAGATGGTCGCGCATGCTCCCGGAACTGATGGCGGATATCATTGGGAGGGTGGAATCTAGCGACGAGCGGTGGCCTCTGCGGAGGAACGTTGTTTCCTGCGCCTGCGTTTGCCGGAGGTGGCGGGAGATCACCACCGGCGTTGTCGGATCTACGAAAGAGACCGGAAAGATCACTTTTCCGTCGTCCCTTAAGCAGCCGGGGCCGACTGATTTGCCTATACAGTGTTTTATTAAAAGAGACAAGAGGACTTCGACGTTCTATCTTTATCTTAGCTTGGCGCAGACATTTTCGGACAAGGGGAAATTCCTGTTAGCAGCACGCAGATACAGACGTGGGTATCGCACCGAATACATCATCTCCCTCGATGCCGATGATCTCTCCCAAGGAAGCAATGCCTACATGGGGAAATTAAGGTCAGATTTCCTGGGCACGAAGTTCAAGCTGTACGACAGCCAGCCGCCATATGAAGGTGCGAAGGCGTCGAGCAGCCGCGCGAGCCGCCGGTTTGGGAGGAAGCGGATCAGCCCGCAGGTGCCTGCCGGGTGCTACGAGATCGGCCAGGTTGCCTACAAATTCAATCTCCTGAAATCCAGGGGGCCTCGCAGAATCCATTCCTGGCTGATATGCCCTATCAGAGCTGCCACTACCACTGCCACCAGGGATGAAGGTCGGAAGCTAGCGCCGGACGCGGCCGCCAGGGATGAAGGCCAGATGCTAGCGGCAGACATGGCCGCCGGAAAGAGCAGCAGCACGGAGATCTCCGCCGTTGTCCTGCAGAACAAGGCGCCAAGGTGGCACGAGCACCTTCAGTGCTGGTGCTTGAATTTTCACGGACGTGTGACGGTCGCTTCCGTGAAGAACTTCCAGCTAGTGGCATCTGCGGCGGAGCTGGGAGAAGATGAGACGGTGCTGCTCCAGTTTGGAAAGGTTGGGGACGACATGTTCACCATGGATTACAGGGAGCCGATCTCCGCCTTCCAGGCCTTCGCCATTTGCCTCACAAGCTTTGGCACCAAGCTCGCCTGCGAGTGATATATCATCGTACAAAACCAATGCTTGTTTCGATGGTGATCATTGTTTGCTGTGTTATTGTCTTGTAGAAGCTCGAAGTACCTTGTAGTTATTTTTTCTTATTATATTTCTTCTTTTTATTTATCAAGTCTATCTCTTGTTGTCTGTAAATTACTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX005889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	57	102	8.00E-06
PF01167.17	Tub	120	393	1.00E-85

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.440
SRP064423	SRR2545915	Juvenile tuber	30.310
SRP108465	SRR5643513	five period of Gastrodia elata	35.490
	SRR5643514	five period of Gastrodia elata	35.900
	SRR5643515	five period of Gastrodia elata	55.840
	SRR5643524	five period of Gastrodia elata	35.680
	SRR5643525	five period of Gastrodia elata	47.050
	SRR5643528	five period of Gastrodia elata	41.330
	SRR5643658	five period of Gastrodia elata	36.140
	SRR5643659	five period of Gastrodia elata	37.900
	SRR5643660	five period of Gastrodia elata	39.310
	SRR5643661	five period of Gastrodia elata	48.170
	SRR5643662	five period of Gastrodia elata	47.480
	SRR5643663	five period of Gastrodia elata	39.330
	SRR5643664	five period of Gastrodia elata	61.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.880
SRP279888	Gastro	Gastrodia elata tuber	39.69
	Juven	Juvenile tuber	42.21
	Mother_Gastro	Mother tuber of Gastrodia elata	113.26
	Mother_Juven	Mother tuber of Juvenile	112.54