Gene detail

Detail information of GWHGAAEX005891/evm.TU.scaffold_173.15

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743770442\|ref\|XP_010915503.1\|	7.95E-79	PREDICTED: two-component response regulator ARR18-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q700D9\|MYBF_ARATH	2.00E-28	Putative Myb family transcription factor At1g14600
trEMBL	tr\|M0RI51\|M0RI51_MUSAM	1.00E-66	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P14250_001}
TAIR	AT2G42660	1.00E-32	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000172	710415	716258	+

Transcript Sequence
>GWHTAAEX005891 GTATGAGCCCCACTCATTTCATCTTCTTCCCAACAGCTTCTTCCTCCCCTCTCCCCCCGCCCCCCCTCGCACAAAAAGCCCAGTGCACATTTTCTCTTATAAATTAGGGTTTCCCGCATAACAGAGAGAGAGATGAGAAAGCCCAGAAAAGCAAAAACCAAACAGTATAACGTAGAAAATACATGTAACTCATTCATCAAACGAGCCTCTTCCATGATTAATTAATTATACACCACCTACTTCAGCTCACATTATTATATGCTTTTGTACATCTGTGGTTCAACAATTCATGTCACAAATATGGCTAGACCATTATTCTCCCCCCTCACCTCCCCATAACTCATTCTTCCGCCTCTAGAAGCAGACCAGCCTGAGTTCAAAAAGAAGAAGAATTGGAGAGAGGGATACATGGAGGAGGAGAAGGGGAAGGAAAAGCTGATGGACCTCAACGATGACGCGATCTTCTACCAGAGCGGGAGCGAAGAAGAAGAAGACGACGAAGAAGATAAGGGAAGCACGAGCGAAGTGATTGGAGGAGCCAGGGAGTACCTATCGGGGAGCGACGCCGACGGACGCCCAGGATCTAGCAAGAGCAAGGATGGCGACGAGGGCCGCCCCGGGCCCGCCGTCCGGCAGTATGTCAGATCCAAAATGCCGAGGCTCCGGTGGACCCCCGAGCTCCATCTCTCCTTCGTTCATGCTGTTGAGAGATTGGGAGGCCAAGAGAGAGCTACCCCCAAGCTGGTGCTTCAGATGATGAATGTGAGAGGTCTCAGTATTGCTCATGTAAAGAGCCACCTTCAGATGTATAGAAGCAAGAAGCTCGATGATTCGGGGCAGGAAAGAAGCAACATTTCTTCAGATCTGTCGTCGCCGTTGGATGCGCATCTGAGGAGGGAGAGGCTGCAGGAGATGCTGCGCCAGAGGGTGGGGCCGTACAGAGGGGGGCTGTTTAGGGCCGGAAACATTTATGAAGCCGACTGGTTTCATAAGGTGCTGCAGAAATCGCAGCCTCAGCAGCAGCAGCAGCAGCACTCGAGCTTCAGTAGAAACCAAGAGTGGGCTTTCAATCAGCAGATGCAAGCGAGGACTAATTACTCCATCAAAGATCAATGCTCGGCCAATGGATTAGTGCATGAGCTGATGCTTAATAAGGATGCGAACCCGTCTTGTTCTCATCTGTTTGATCTCAGAGATGTGATTGCAGCAAATAATGAGCTATCAAGAAAGCCTCAGAGGTTTCATGAGGAGCGGTGGCAAGTGGGAGGGAACAGCTCTTATCGCCATCAGCAGCACTTTATTAGTCCATCTCTGTGTAACTCTAATTTTAAGAAGAGAGTAATTAATTGCAGCATTAATGACCGATTATCTTTCCTTAATCATCATTCTTCTGCATTCAACACTGGATATGAGAGCTCTAAGTTCCAGTCCCCGGCTCTTGATACAGCTGAGAGTGGAGTGTTAGGAGCGCAGGAGAGGGAAGAAAATCGCGGAGGTGCAAAGAGGATGCGATTGATTGATGAGAACAAAATCAGCAAGCCCGATCTGCATCTAAGTCTTAGCAGCACAAGCTCCATGGAAACAGGATTAACAGGAGCGGACAGCACTGAGCTCTCCCTTTCCCTCGCCCAGACCGTTCCGCCTGGCGAGAATCTCCAGAAAATTGCGCCGAAAACGCGCGGTGAAATATCGAACCGCGAGATCGATTTCTTCAGCCTGAGCAGCAGCAAGAAATCAAGCTTAAGGATGACTGCTTTGGATCTCACCATGTCAATCAGCTAGGCATTGGACTGATGGCTTTGCTCATCAAGGCCTTGATCATATTTAGCAGGCTTAATTAGACTACTTGTAACTCAGGGAGAATAAGTATTATTAGTTAATTAACTAGTTTATCTCTTTCTTTTTTCTTTTTTGAAGCATTTTAGAGGATAGTAGTAGCCTGATTTATTAATGCTAGGTATCAGAGTTACTAAAATCATCTGAAATCAGAGTTGATGTAATGCCATCGGATCCATTGCCA

Network for GWHGAAEX005891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	84	135	1.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.450
SRP064423	SRR2545915	Juvenile tuber	31.030
SRP108465	SRR5643513	five period of Gastrodia elata	24.110
	SRR5643514	five period of Gastrodia elata	32.140
	SRR5643515	five period of Gastrodia elata	21.210
	SRR5643524	five period of Gastrodia elata	30.280
	SRR5643525	five period of Gastrodia elata	0.070
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.090
	SRR5643659	five period of Gastrodia elata	18.850
	SRR5643660	five period of Gastrodia elata	18.800
	SRR5643661	five period of Gastrodia elata	17.040
	SRR5643662	five period of Gastrodia elata	17.960
	SRR5643663	five period of Gastrodia elata	12.110
	SRR5643664	five period of Gastrodia elata	11.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.260
SRP279888	Gastro	Gastrodia elata tuber	20.61
	Juven	Juvenile tuber	19.65
	Mother_Gastro	Mother tuber of Gastrodia elata	7.34
	Mother_Juven	Mother tuber of Juvenile	10.13