Gene detail

Detail information of GWHGAAEX005895/evm.TU.scaffold_173.21

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743799869\|ref\|XP_010925635.1\|	PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Elaeis guineensis]
Swissprot	tr\|Q5VMP0\|MAX2_ORYSJ	F-box/LRR-repeat MAX2 homolog
trEMBL	tr\|M1DA70\|M1DA70_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400085749}
TAIR	AT2G42620	RNI-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000172	859350	861768	-

Transcript Sequence
>GWHTAAEX005895 AAAAAAAAAAAAAAAAAAAGTAAGTCATTATGTCCGGTGAGGAGGCCGAGGATGACCTATTATGAAATGACGGCTAATAACATAAAGAAAACGAAACTGCGATAGAGGGACGACAAGCCGACGAAAAATCACATGATTTGATCTCTCCCGTCCACGTTCTCCCACCAATCTGCATCGACTTCCTATCCTACTTCGCCTTCCCTTTTGCACTGGCCTTCATCCCATCCCTGTCGATGGCGGAAGGCGGGACTCACCTCCACGACCTTCCCGACGCGGTGCTCTGCCTCACCTTCTCCCTCATCTCCGACGTCCGCACGCGCAACTCCGCCTCTCTCACGTGCCGCAAGTGGCGCTCTCTGGAGCGGGCCACGCGCGCCTCCCTCGCCCTCCGCGGCAACATCCGCGACCTCTTCCTCCTCCCCTCGTGCTTCTCCTCCGTCTCCCACCTCGACCTCTCCCTCCTCTCCCCTTGGGGCTGCCATCACCCCCCGTCCTATTACCCACTCCGCCTCGTCTCCGCCTTCCCCTCCGTAGTGTCCCTCACCATCTACGCCCGATCAGCCGCGATGAGCCCGTGCTGGCCCAACCTCCGGCGAGCTGCTCTGGTGCGGTGGCACCCGAGACCTAACCACCCCCCGGGGCTGGACCTCTCCCACCTCCTCTCTTCCTGCCCGAATCTCTCCTCGCTGGACCTCTCACGCTTCTACTGCTGGCCGGAGGACATTCCTGCCGCCCTCTCCAGCCACCCTTCGCCGGCCCGTTCCCTCACCCGGCTCGACCTCCTCTGCCCGGCTTCCTCTGAAGGCTACCGCTCCTCGGACCTCCTCTCCATCGCCACCGCCTGCCCCAGTCTCCGAGCCCTCCTCGCCCCCTGCGTCTTCAATCCCCGCTTCTCTGACTCTGTCGGCGATGACGCCCTTCTCTCCCTCGCCGCCGCTTGCCCCAACCTTTCCCTCCTCCGCCTCGCAGACCCCCTCACCCTATCCCCTTCCCGTGAGCCCCTCACCGACCCCCGGAACTCCCGCCTCACCACCGCAGGCCTCCGCGCCCTCTTCTCCGCCCTCCCCCGCCTAGACGACCTCCTCCTCGACCTCCGTCACACCGTCCCCGATTCCGGCCCCGCGCTCGGCTCCCTCGCCCGCCGGATCCGCTCCCTGAGCCTCGGTGGCTTCCAGGCCGTCTGCAGAGCCGCCTGGCTCCACCTCGACGGCGTCGCCGTCTGCGGAGGGCTGCGCAGCCTCTGCATCAAGGGCTGCGACGACCTCTCCGACGCGAGTCTTTCCGCCATCGCCCGCGGCTGCCGCCACCTCACTCGACTCGAACTCCACGCCTGCAGTATGGTCTCTGAGGCCGGGATCAAGAGGCTGGCAGGCGCGCTCCGGCCAACGCTCAGGGAGGTCGCGATCTCCAGCTGTGCTAGGCTCTGCGCGGCCTCCTCAATCCGCGCTGTTGAGCCGATCCGGGACCGGATTGAATGGCTCCACATCGACTGCATCTGGGAGGAGAATCATTTGAACGAGGGGAAAGGGGAAGACGAGGAGGATTCTGAGGACGAATCGGAGTCGGATTCAGATGGTATGCGGAAGCGCAGGCGGTGTTCAGAATCGTTCGAGCAGCTGCGGCGCCTCTCAGTTTGGATAGCGGCGGGGGAGGTGCTGAGCCGGCTGGCGGAATCGGGGCTGGAGAGCTGCCCGGAATTGGAGGAGATGAGCATAAAGGTGGAAGGGGACTGCAGGACGTGCGGGATGCCGGCGGAGGCGGCGTTCGGGCTGAGCAGTCTGGCTCTGTACCCGCGGTTGTGGAAGATGAAACTGGACTGCGGGGAGGTGGTAGGGCACACGCTGACGGTGCCGACGGGGCACATGGATCTGAGCCTGTGGGAGAGGTTCTACCTCAGCGGGATCGAGGATCTGGGGCTGTACCAGCTAGATTACTGGCCGCCGCAGGACAGGGACTTGAATCAGAGGAGCCTGACGCTGCCGGCGCCGGCATTGATTCCGGGGTGCGCGTCGCTGAGGAAGCTGTTCATACACGGGACGATGAACGAGCACTTCTTGAGCTTCTTCCTGGGGATGCCCAACCTGAGGGATGTGCAGCTCAGGGAGGATTACTACCCCGCGCCTGATAATGATATGAGCACAGAGATGAGGGTCGATTCCTGCAGCAGATTTGAAGACGCGCTAAACAGTAGGGTTATTCCTGATTAATGTTTTTTATTTTTTGTCTGTTGTTCTTGGATTGTCCGAAAGGTGACTGATTTCTTCTTCTTTTTGTACTCGACTTCGGTTTAATGTATGATATTTCTTTTTATTATTTTCTTTTTTTGGATATGTTATAGTAAAATAGGCACCTCATTTTTAGCAGTTATATATATAAACTGTAATGTATTAGAGTTAATTGTTTTAATTTATGGTTGCTT

Network for GWHGAAEX005895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.230
SRP064423	SRR2545915	Juvenile tuber	15.170
SRP108465	SRR5643513	five period of Gastrodia elata	61.390
	SRR5643514	five period of Gastrodia elata	26.570
	SRR5643515	five period of Gastrodia elata	27.020
	SRR5643524	five period of Gastrodia elata	31.750
	SRR5643525	five period of Gastrodia elata	16.090
	SRR5643528	five period of Gastrodia elata	15.710
	SRR5643658	five period of Gastrodia elata	15.120
	SRR5643659	five period of Gastrodia elata	31.790
	SRR5643660	five period of Gastrodia elata	33.380
	SRR5643661	five period of Gastrodia elata	34.410
	SRR5643662	five period of Gastrodia elata	21.990
	SRR5643663	five period of Gastrodia elata	15.390
	SRR5643664	five period of Gastrodia elata	18.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.910
SRP279888	Gastro	Gastrodia elata tuber	16.06
	Juven	Juvenile tuber	44.87
	Mother_Gastro	Mother tuber of Gastrodia elata	47.57
	Mother_Juven	Mother tuber of Juvenile	62.35