Gene detail

Detail information of GWHGAAEX005897/evm.TU.scaffold_173.24

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743770460\|ref\|XP_010915513.1\|	1.22E-151	PREDICTED: SCAR-like protein 2 isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q5QNA6\|SCRL2_ORYSJ	7.00E-75	SCAR-like protein 2
trEMBL	tr\|M0REC4\|M0REC4_MUSAM	1.00E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P00970_001}
TAIR	AT2G38440	5.00E-51	SCAR homolog 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000172	1036344	1082177	+

Transcript Sequence
>GWHTAAEX005897 GCAAGGGCAATTTTTTGCCAAGTCAGGGATGAAAAACAGAAATGAGTTAGGCAATGCGGAGCGAGCACGAATGTGACTGACACACATGATGTGGGGCGTGATGTTGAGCATACGTGACAAAAATCGTAGCTTTGTCTCTTGTGCTTTTTATTTGAATCTTCTTTAAAACAAACTTGGATTATTTGAGTGTGCAGCAGGACCACGTTTAGTAGACAAAGCCGAGAAGACAGATGCGCTGTAGCTATGGAAGTAGCTTCATCAGAAGGCAACGTCGCACTTGCAACCTAAAGGCTCGAGATTGACAGTTAGGCGGTCGTCTCACCGCCTCCTAAAAAGCATTAGGTTGTCCTAGCTACCGTCCTTGTTGTCATGGAAGCTTTCGGCGGAGAATGGCTTCCTGGGTAGAGGTTCCATAGTTTGGGACAGTGAACCTGTGAGAGCATGCCGCTCGTGCGATTAGAATTGAGGAACGAGTATGGACTCGGAGATGCCGCGCTTTACAGGAACGCCGATGCCTGGAAGGAGGGTACTAAGGCGATTCTCGAAGGAGTTGCCGTCTCCGGGCTCGTAGGTATCTTGCGGCAGCTTGGAGATGTGGCCGAGTTTGCTGCAGAAATTTTTCATGGGTTGCATGAGCAAGTAATGATGACAAATGCAAGAGGACAAAAAATGCTTTTTAGGATAAGCAAGATAGAAGAGGCATTTCCATCTATTGAAGATGCACTTTGCAGAAAAGGAAGTTGCATCGACGTAGCTTATGGAACTGCTTGGCACGCTGATCTCAGGAGCACGAATACTCTCCTATCTGGCAATGATTTACCACAGTTTATGATGGATTCTTATGAAAAATGCAGGGAACCACCACCCTTGTATCAACTTGACAAATACGATACTGCTGGGACTGGAGCTTGTTTGAAGAGATATTCCGATCCATCATATTTCAAAAGGGCATGGGCTACCTCAAAACCAGAGAAAGCTCAACAATCTAAAGAAGAAGAAAAACTTCAGAAAATCAAGAGAGAATATCCACGGCTAAGTGAAGAAGTACATGATCCATTATCTACATCACAGTATAACAGTTTGGCTAGCAGTGCAAGGTTTGCACCTCATTGTAATGATGACAATATCTTATTAGCTGATGAAAATTCATCAGAGTTTGAAGATAGATTAAAAACTGATGTTATAAGCCAATCCCAACTTTTGAATACTACAAACAAGTTGAGCTTTACTGGACTAATTTTTGAGACAAACCGTTTACTTGGATCGGTTTCTAATATAGAGAACAATCAGGATCAGTATAATACTTCACTTCATGATGATGAACTTATATGTGGTGTGGATGATGTTTGTCAATCTGATTTCCTTCATAGAAAGAGTACTTCACAGTCACCTTCTGTTATATGGGACGAAAAATTTGAATTTGTGAAGGGCCTTAAGTTTTCTGATGGCACTCATGCTTCAATGTTATTGCCTGCAGACCATTATTCATCAGAAATTGAAGAACCTGCTGGACCTGAATTTTTGAGCCAAGCAACATCCTTGCCCATTATTGCAGATTTATCCACATTATCTTGTGATAAATATAAATTTGATGAAGATAACTGTGCAGAAAACTATGTGGATGCTCATAATACACTAGAATCAGAGGCAGAGACAGATTCTGAGTGCCAAACAAAATGTAACCATTCTATTTCGAGCCTGCCACATCAGCAAAATGTATCTGGAGTTGCAAATATAACTCAAAGCTACTCTTGTATTGAGGCCATGTTACCACTTGATTCCCAAGACAGGTGCATGCTATCAAGTGACACCTGTTTAGATGTTTCAAGCATGCCAGAATTTACACAAACTACCCAGGAAGCTGGCATATCTGCAGACCGTCCCTTTCATGGGGGCCAACTTTGCAATAAAACTGTTCTCACAATGTCAGGAACTAATGCTTTACAAAGGGCAGATGATGATCATCCTTTTTTGTCCACTGATGCTGAATCAGAATCTGTATTGAATTGTGAAACTACTGCAGCAACATCCCAGATTCAGATTTCACCTCCTGACAGTATTGAAAATATTCCTTCTACAAAATTATGGACAAATGGTAACCTTCTAGGACTTGAACCATCAACGCCTTTCAATATTTGTCTTCCAAGTAAAACTGTGGAGAGGCCTTCAGCTAATGGTTTTAACAATGATGTTAAGTCATATAAACAATGTTTGGCCAATGGGCAGATATCACAGCAAATGAACTTAATTAACCAAGTGCAGGGACCACTTGAATCCTTATGCTTAGCGGATCAGTTGAATTTGAAGAGTAATAAGTTCTTGAGTAAGAAATATATAGTTAAAGAAAATAATTCTATGAAACATTCATCAGCGTACCTTAGTGATAAAAATGATGGCTTTCATGTTCAGAGGAATTCTCAAGCACAATCTAAAGTTATTTCTTTCAATGAGCAAGAAGAAAGTAAAGTTTCCTCCCCAAATGAATTAAATACTAGCATTAATCAGGTGCATCAGATAACAAACAATGCTTCTAGCAAGGAATCTGAACCATGCAGCACAATTACCGTTCCTTCATTCTCAGTGAATTCTAAACACAATCTCAATCATTTATCTTATTTTTATGAACTCCCTAAAGGATATCCTGCACAGGGCCTTCAAATAATACCAACGAATGCCAAAAGTTTTTCCCAGTATGAACAAAAATATGAACAAACAGATGATGATTATAGCCAATCAATGGATAAATCTATTGTTGGTAATCAGGGGAAAAGGCTGAATGCACTTACATCTCAATCAGTATATGAGCAGAAACTTCCATCACAAATGTACTCTGAGCAGAGTTTAACAAAGACCGATTTTGATTTAATGGAAAAGCCTGTGTCTGCCTATTCTCAGTGTTCTCAGAATTGTTCTCCACCATTAGAGCATATGAAGTTGTCATTCAATCCCATGAATTGTCTTGAGGCATCTAATCTGAAACTAGAACTTCCTGATGGCTGTATAAATGAAAGAATAGATAGAAGTATGTTTCCTTCATTTCGTTTGTATCCAGGACTCACTCTTCCTGCACAAGATGGTTGCTCTGAATCAAGTGATGACTCTTCCTGTGAATCAAGTTGTTCAAATGAGGATCTTCTCAGTCCTCTCTCAGAGTCAAATTCTGAGTTTTGGGAGCAAGATGCTTGTTCTGGGAGTAAAACAAATGAACTTTCTGATGGCTTACAAAGAATTTCTTCCCCAACGACTTGTATTTCTAGTTACACTAGCCAGGAACAATTGAACCATGTGAATCAGGAAATTGGATTGATGGATATTCGTATGGGAAATGTGATAGATTCTTTCCAACCTAGTTATATTGCAAATATTCCAACTTTTGAATCATTATTAAATCAAGAAATTAATTATGATTCTTTGTCAATTAGTCTCATGAATGTTGCAATGTTACCGCCAATGGAACTGCCACCCCCACCACCTCTTCCTCCAATACGGTGGAGATTGGCAAGGTCATTATATGAAATATCAAAGGATAGTTATTCTAATGTTTCTCAAGTGGTTAACCAATTTGAGGACTCTATCAATGAATATCAGCAAGTTTTTGTGGAAACTCAAAGCATTAATCAAAGATCACCTCTCCTTGTGAAAGATGAACAATGCATGAAAATGCAAGATAATTTAAAGTTGGATAGCTTGAAGGCCAATCTTTTTTCAAATCCTTATGAACTGGACAGAAGGGAGCAATTGCTTCAACAAATCAAGGATGTGGACAATCAGAGTAAGCTGAGGCCATGTGAAGATTCAAAGAGTCTAGCTGCTAGTAGTGGAATAGATGAAAGACAAGGTTTGCTGCATCAGATAAGGACCAAGACGCTTAATTTAAGGCACGCAGCTACAACAAGCCCTGATTTGGCGCCACAGCCGGCCACTAATGACCAGGTTGCTGCGATACTGAAGAAGGCTAATGCTTTACGCCAGGCATGCGCGACCAGCGAAGAGGATGACTGCAATGATGATGATGATTGGGGTGATATCTGAACTTTCTTCTCTTGATTATTTGAAGAAATCCTTGTTTGAAATAATAAAATAAAATACTCATCAAATATGCATGGAGATTTGAGGGTATTGTTCTTTTGTTCGGGTGAATGGTGGAGAGGCGAGGATGTTTTTTCTCTCTATTTGTGATGGCCTGGCTCATGTATCTCAGAACTGAATATCACAAATCTCATAGCATATTCAATGATTTTTTTCCGTTCCTCTTAATAAAATTTTCAAGGAATTTCTTATAGAAGCTTTGTTCGCAATCTTGAGCAGTTTCAGGAAATATATATATGTGTGTGTGTACAACTTCAACCAAGAAGTATTGATTCATATCAATGTAATATAAGTGGTAATGGCAATAATTTGTTCAACTTGTTCTTTGATCAGAGAAAATGAGTTCTTAGCGAGCACGAAACAT

Network for GWHGAAEX005897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX005897
MPLVRLELRNEYGLGDAALYRNADAWKEGTKAILEGVAVSGLVGILRQLGDVAEFAAEIFHGLHEQVMMTNARGQKMLFRISKIEEAFPSIEDALCRKGSCIDVAYGTAWHADLRSTNTLLSGNDLPQFMMDSYEKCREPPPLYQLDKYDTAGTGACLKRYSDPSYFKRAWATSKPEKAQQSKEEEKLQKIKREYPRLSEEVHDPLSTSQYNSLASSARFAPHCNDDNILLADENSSEFEDRLKTDVISQSQLLNTTNKLSFTGLIFETNRLLGSVSNIENNQDQYNTSLHDDELICGVDDVCQSDFLHRKSTSQSPSVIWDEKFEFVKGLKFSDGTHASMLLPADHYSSEIEEPAGPEFLSQATSLPIIADLSTLSCDKYKFDEDNCAENYVDAHNTLESEAETDSECQTKCNHSISSLPHQQNVSGVANITQSYSCIEAMLPLDSQDRCMLSSDTCLDVSSMPEFTQTTQEAGISADRPFHGGQLCNKTVLTMSGTNALQRADDDHPFLSTDAESESVLNCETTAATSQIQISPPDSIENIPSTKLWTNGNLLGLEPSTPFNICLPSKTVERPSANGFNNDVKSYKQCLANGQISQQMNLINQVQGPLESLCLADQLNLKSNKFLSKKYIVKENNSMKHSSAYLSDKNDGFHVQRNSQAQSKVISFNEQEESKVSSPNELNTSINQVHQITNNASSKESEPCSTITVPSFSVNSKHNLNHLSYFYELPKGYPAQGLQIIPTNAKSFSQYEQKYEQTDDDYSQSMDKSIVGNQGKRLNALTSQSVYEQKLPSQMYSEQSLTKTDFDLMEKPVSAYSQCSQNCSPPLEHMKLSFNPMNCLEASNLKLELPDGCINERIDRSMFPSFRLYPGLTLPAQDGCSESSDDSSCESSCSNEDLLSPLSESNSEFWEQDACSGSKTNELSDGLQRISSPTTCISSYTSQEQLNHVNQEIGLMDIRMGNVIDSFQPSYIANIPTFESLLNQEINYDSLSISLMNVAMLPPMELPPPPPLPPIRWRLARSLYEISKDSYSNVSQVVNQFEDSINEYQQVFVETQSINQRSPLLVKDEQCMKMQDNLKLDSLKANLFSNPYELDRREQLLQQIKDVDNQSKLRPCEDSKSLAASSGIDERQGLLHQIRTKTLNLRHAATTSPDLAPQPATNDQVAAILKKANALRQACATSEEDDCNDDDDWGDI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.700
SRP064423	SRR2545915	Juvenile tuber	37.290
SRP108465	SRR5643513	five period of Gastrodia elata	12.880
	SRR5643514	five period of Gastrodia elata	8.360
	SRR5643515	five period of Gastrodia elata	11.670
	SRR5643524	five period of Gastrodia elata	11.110
	SRR5643525	five period of Gastrodia elata	18.640
	SRR5643528	five period of Gastrodia elata	23.520
	SRR5643658	five period of Gastrodia elata	32.610
	SRR5643659	five period of Gastrodia elata	20.420
	SRR5643660	five period of Gastrodia elata	15.710
	SRR5643661	five period of Gastrodia elata	16.840
	SRR5643662	five period of Gastrodia elata	9.080
	SRR5643663	five period of Gastrodia elata	12.760
	SRR5643664	five period of Gastrodia elata	9.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.680
SRP279888	Gastro	Gastrodia elata tuber	8.44
	Juven	Juvenile tuber	22.65
	Mother_Gastro	Mother tuber of Gastrodia elata	22.70
	Mother_Juven	Mother tuber of Juvenile	20.08